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Name : topB (ROD_12951) Accession : YP_003364880.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : 5.99.1.2 Position : 1391761 - 1393707 bp Length : 1947 bp Strand : + Note : - DNA sequence : ATGCGGTTGTTTATTGCCGAAAAGCCGAGTCTGGCCCGCGCGATTGCCGATGTGCTGCCGAAGCCGCACCGTAAAGGCGA TGGCTTCATCGAGTGCGGAAACGGGCAGGTGGTCACCTGGTGTATCGGCCACCTGCTGGAGCAGGCGCAGCCTGACGTCT ATGACAGCCGCTATGCGCGCTGGAATCTTTCCGACCTGCCGATTGTGCCGGAAAAGTGGCAGTTGCAGCCGCGTCCGTCG GTGACCAAACAGCTTAATGTGATCAAGCGGTTCCTGCATGAAGCCAGTGAAGTCGTTCACGCCGGCGACCCGGATCGTGA AGGGCAGCTGCTGGTCGATGAAGTGCTGGATTACCTGCAGCTGGCGGCGGAAAAGCGTCAGCAGGTGCAGCGCTGCCTGA TCAACGACCTGAACCCGCAGGCGGTAGAGCGGGCCATTGAGCGTCTGCGTTCCAACAGCGAGTTTGTGCCGCTGTGCGTT TCGGCGCTGGCGCGCGCCCGCGCCGACTGGCTGTACGGCATCAATATGACCCGCGCTTATACCATTCTCGGACGCAATGC TGGTTATCAGGGCGTGCTCTCGGTCGGGCGCGTCCAGACGCCGGTGCTGGGGCTGGTGGTGCGTCGCGACGAAGAAATTG AGAACTTTATTCCAAAAGATTTCTTTGAGGTGAGAGCGCATATCGTCACTCCCGCTGACGAGCGTTTTATCGCTATATGG CAGCCGAGCGAAGCCTGTGAGCCGTATCAGGACGAGGAGGGGCGACTGCTGCACCGTCCGCTGGCCGAGCATGTGGTGAA CCGGATCAACGGTCAACCGGCCTTCGTCACCAGCTATAACGATAAACGGGAATCAGAATCCGCGCCGCTGCCGTTTTCGC TTTCCGCCCTGCAGATTGAGGCGGCAAAGCGTTTCGGCCTGAGCGCGCAAAACGTTCTCGACATCTGCCAGAGGCTGTAT GAAACCCATAAACTGATCACCTACCCGCGTTCTGACTGCCGCTACCTGCCGGAAGAGCACTTTGCCGGTCGTCATGCGGT GATGAACGCTATCGGCGTTCACGCGCCGGATCTTCTGCCGCAGCCGGTGGTTAACCCGGATACCCGCAACCGCTGCTGGG ATGATAAAAAGGTCGATGCGCACCACGCCATCATTCCTACTGCGCGCAGTTCGACAATCAACCTCAGCGAAAATGAAGCG AAGGTTTATAACCTGATTGCGCGTCAGTATCTGATGCAGTTCTGTCCGGATGCGGTGTTCCGCAAATGTGTGATAGAGCT GGAGATCGCCAAAGGCAAATTTATCGCCAAAGCGCGCTTCCTGGCGGAAGCCGGGTGGCGCACGCTGCTGGGCAGTAAAG AGCGCGACGAGGAGAACGACGGAACGCCGCTGCCGGTGGTGGCGAAAGGTGATGAGCTGCTGTGTGAAAAGGGCGAGGTC GTTGAGCGTCAGACCCAGCCACCGCGGCACTTTACCGACGCCACGCTGCTGTCGGCGATGACGGGGATCGCCCGCTTTGT GCAGGATAAAGATCTGAAGAAGATCCTGCGCGCCACCGACGGGCTGGGAACGGAAGCGACCCGCGCCGGGATTATCGAGC TGTTGTTTAAGCGCGGTTTTTTAACCAAAAAAGGGCGCTATATTCACTCGACCGACGCTGGCAAAGCGCTGTTCCACTCG CTGCCGGAGATGGCGACCCGTCCCGATATGACCGCGCACTGGGAGTCGGTGCTGACGCAAATCAGCGAAAAGCAGTGCCG CTATCAGGATTTTATGCAGCCGCTGGTAGGAACGCTGTATCAGCTGATCGATCAGGCGAAGTCGACGCCGGTTCGCCGCT TTCGCGGCATTGTCGCCCCCGGCGGCGGAAGCAGCGAGAAGAAAAAGAGCGCGCCGCGTAAGCGGGCGGCGAAAAAAAGC CCGCCATCGGCAGAGGCGGGCCTGTAG Protein sequence : MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQPDVYDSRYARWNLSDLPIVPEKWQLQPRPS VTKQLNVIKRFLHEASEVVHAGDPDREGQLLVDEVLDYLQLAAEKRQQVQRCLINDLNPQAVERAIERLRSNSEFVPLCV SALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFIPKDFFEVRAHIVTPADERFIAIW QPSEACEPYQDEEGRLLHRPLAEHVVNRINGQPAFVTSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVLDICQRLY ETHKLITYPRSDCRYLPEEHFAGRHAVMNAIGVHAPDLLPQPVVNPDTRNRCWDDKKVDAHHAIIPTARSSTINLSENEA KVYNLIARQYLMQFCPDAVFRKCVIELEIAKGKFIAKARFLAEAGWRTLLGSKERDEENDGTPLPVVAKGDELLCEKGEV VERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRGFLTKKGRYIHSTDAGKALFHS LPEMATRPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLYQLIDQAKSTPVRRFRGIVAPGGGSSEKKKSAPRKRAAKKS PPSAEAGL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 3e-107 | 41 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 2e-107 | 41 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 3e-107 | 41 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 4e-104 | 41 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 2e-111 | 41 |
