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Name : hofB (ROD_01111) Accession : YP_003363757.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Virulence Product : protein transport protein HofB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 131545 - 132930 bp Length : 1386 bp Strand : - Note : - DNA sequence : ATGAATACCACGCAGCTAAAAGCGCTTTGCCAGCGCTATCAGGGGATCCTGCTTGACGCCGATAGCGAAGCCGTACACGT CGCCGTAGTGGACGCGCCTTCCCATCAGCTACTGGATGCCCTGCACTTCGCCACCACCAAACGCATTGAAATTGTCTGCT GGACGCGTCAGCAAATGGAGGGACATCTGCACCAGCCGCAGCAAACGCTGCCCGCGGTGATACCTGAATCCAGCCTCAGC GCGGCGACGCTACTTGATAAAACGTTACAGGCAGCGCTGACCAGCCGCGCCTCAGATATCCACATTGAGCCTGCGGAACA TCACTTTCGCATTCGCCTGCGGATAGATGGCGTGCTGCATAGCCTGCCCGATATTGCGAAAGAGACGGGCGTCGCCCTGA CGGCGCGGCTGAAGGTCCTGAGCCATCTGGACATTGCCGAGCACCGGCTGCCGCAGGATGGTCAGTTCACCGTCGAACTG AACGGCGCCGCCGTCTCGTTTCGTATTGCCACGCTCCCGTGCCGCCAGGGTGAAAAGGTGGTGCTGCGTCTGCTGCATCA GGTGAACCAGGCGCTGGAGGTTACCGCGCTGGGAATGCACGACACGCAGCTTTCCGCCTTTAACCATGCGTTACAGCAGC CGCAGGGGCTGGTGCTGGTCACCGGCCCCACGGGCAGCGGCAAAACGGTGACGCTGTACAGCGCACTGCAGTCGCGAAAC GCGACGGAGGTAAACCTGTGCAGCGTTGAAGATCCGGTGGAGATACCGCTGGAGGGTATTAACCAGACGCAGATCCATCC GCGCGCCGGACTGACCTTTCAGAGCGTATTACGGGCGCTGTTACGCCAGGACCCGGATGTCATTATGGTCGGTGAGATCC GCGACGGCGAAACGGCGGAAATCGCCATTAAAGCGGCGCAAACCGGTCACCTGGTGCTTTCCACGCTGCATACTAACTCC ACCTGCGAAGCGCTGGTGCGCCTGCAGCAGATGGGCGTGGCGCGCTGGATGCTCTCATCGGCGCTAACGCTGGTAGTGGC GCAGCGTCTGGTAAGAAAATTGTGCCCCCACTGTCGCCGCCTCACAGACGATCCTGTCCGTTTGCCGCAAGCCGTGTGCG CCATGCCCCTGCCCCGCTGGCTGGCGCCGGGCTGTGAGCATTGTTATCACGGCTATTATGGCCGCACGGCGCTGTTTGAA GTGCTGCCGATAAGCGCCGGGCTGCGCCAGCAGATTGCGAACGGCGCCACGGCAGAAGCTCTGGAAGGGTATGCCAGACA GGCAGGGATGCTCACGCTGTTTGAAAGCGGCTGCCGCGCCGTTGACCAGGGACTGACGACATTTGAGGAGCTGGTACGCA TCCTGGGTATCCCCAATGAGCGCTAA Protein sequence : MNTTQLKALCQRYQGILLDADSEAVHVAVVDAPSHQLLDALHFATTKRIEIVCWTRQQMEGHLHQPQQTLPAVIPESSLS AATLLDKTLQAALTSRASDIHIEPAEHHFRIRLRIDGVLHSLPDIAKETGVALTARLKVLSHLDIAEHRLPQDGQFTVEL NGAAVSFRIATLPCRQGEKVVLRLLHQVNQALEVTALGMHDTQLSAFNHALQQPQGLVLVTGPTGSGKTVTLYSALQSRN ATEVNLCSVEDPVEIPLEGINQTQIHPRAGLTFQSVLRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGHLVLSTLHTNS TCEALVRLQQMGVARWMLSSALTLVVAQRLVRKLCPHCRRLTDDPVRLPQAVCAMPLPRWLAPGCEHCYHGYYGRTALFE VLPISAGLRQQIANGATAEALEGYARQAGMLTLFESGCRAVDQGLTTFEELVRILGIPNER |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-69 | 46 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-69 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hofB | YP_003363757.1 | protein transport protein HofB | VFG2426 | Protein | 1e-70 | 48 |
| hofB | YP_003363757.1 | protein transport protein HofB | VFG2048 | Protein | 1e-71 | 46 |
| hofB | YP_003363757.1 | protein transport protein HofB | VFG0182 | Protein | 9e-73 | 45 |
| hofB | YP_003363757.1 | protein transport protein HofB | VFG1876 | Protein | 3e-72 | 44 |
