|
Name : kdsB (ROD_09861) Accession : YP_003364609.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Virulence Product : 3-deoxy-manno-octulosonate cytidylyltransferase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1212 EC number : 2.7.7.38 Position : 1084894 - 1085640 bp Length : 747 bp Strand : + Note : - DNA sequence : ATGAGTTTTGTCGTCATCATTCCGGCGCGCTATGCGTCCACGCGCCTGCCCGGCAAACCGCTGCTGGATATCAATGGTAA GCCGATGATCGTGCATGTGCTGGAGCGCGCCCGTGAGTCCGGCGCCGAACGCATCATCGTCGCCACCGACCACGAAGAGG TGGCCCGCGCCGTTGAGGCGGCGGGCGGCGAAGTCTGCATGACCCGCGCCGATCACCAGTCGGGCACAGAGCGTCTGGCT GAAGTAGTGGAAAAATGCGGTTTCAGCGACGATACCGTCATTGTCAACGTGCAGGGCGATGAGCCGATGATCCCGGCGGT TATTATTCGCCAGGTGGCAGAAAATCTGGCCCAGCGTCAGGTGGGAATGGCCACGCTGGCTGTGCCGATTCACGGCGCGG AGGAGGCGTTTAATCCCAATGCGGTGAAGGTGGTGCTGGACGCCGAAGGCTATGCGCTTTACTTCTCACGCGCGACCATC CCGTGGGATCGCGATCGTTTCGCCAAAAGTCTGGAAACCGTCGGTGACACCTTCCTGCGGCACCTGGGAATTTACGGCTA TCGCGCCGGTTTTATTCGCCGTTATGTGAACTGGCAGCCCAGCCCGCTGGAAAATATCGAAATGCTGGAGCAGCTTCGCG TACTCTGGTACGGCGAAAAAATCCACGTGGCGGTGGCAAAAGAAGTCCCTGGCACCGGGGTGGATACTGCCGAAGATCTT GAGCGCGTTCGCGCTGAGATGCGTTAA Protein sequence : MSFVVIIPARYASTRLPGKPLLDINGKPMIVHVLERARESGAERIIVATDHEEVARAVEAAGGEVCMTRADHQSGTERLA EVVEKCGFSDDTVIVNVQGDEPMIPAVIIRQVAENLAQRQVGMATLAVPIHGAEEAFNPNAVKVVLDAEGYALYFSRATI PWDRDRFAKSLETVGDTFLRHLGIYGYRAGFIRRYVNWQPSPLENIEMLEQLRVLWYGEKIHVAVAKEVPGTGVDTAEDL ERVRAEMR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsU | AAZ04469.1 | CMP-KDO synthetase | Virulence | PAI I APEC-O1 | Protein | 7e-34 | 45 |
| kpsU | YP_854332.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | Not tested | PAI I APEC-O1 | Protein | 1e-33 | 45 |
| kpsU | CAE85213.1 | KpsU protein | Virulence | PAI V 536 | Protein | 9e-34 | 45 |
