Gene Information

Name : RMDY18_07830 (RMDY18_07830)
Accession : YP_003362435.1
Strain : Rothia mucilaginosa DY-18
Genome accession: NC_013715
Putative virulence/resistance : Virulence
Product : cobalamin/Fe3+-siderophores ABC transporter ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 838538 - 839380 bp
Length : 843 bp
Strand : +
Note : -

DNA sequence : 
GTGAACGCTAGTGTGACGACCCGCCTTGAAGGCGAGAACATGGTGGTTGCCTACGGTGAGCATACGGTGCTCAACGGGGT
AGATTTTCAGGTGCCGGAGGGGGAGCTGACCGTTATCTTGGGCCCGAACGCCTGCGGTAAGTCGACCACCTTGAAGGCTC
TTGCCCGCGTGAACCCGCTCAAGAAGGGCGAGGTTCGCCTGGACGGCACCCCGCTGCCGCAGATGAAGTCCCGCGCTATC
GCCAAGATCCTGGCGATGCTACCGCAGACCCCGGAGGCGCCTAGCGGCGTGACCGTGGCGGATGTGGTGGCGCGCGGCCG
CTACCCGCACCAGTCGCTGCTGCGTTCCTGGTCTGATGAGGACGAGCGCGCCTGTGTGGAGGCGATGCAGGCGGCGAACG
TGCTGGAGCTTGCTGAGCGTCCCATTGAGGCGCTCTCGGGCGGTCAGCGTCAGCGTGTGTGGATTGCCATGACCCTGGCG
CAGCAGACCCCGCTGATTCTGCTGGATGAGCCGACCACCTACCTGGATATCACGCACCAGATTGAGGTGCTGAACCTGAC
GAAGAAATTGCATTCCGAAGGCCGGACGGTAGCCGTGGTGTTGCATGACCTGAACCTTGCTTTCAGGTATGCTACTCATG
TTGTGTTAATGAAGCAGGGCCGGATTATCGCTCAGGGTGATCCGCGTGCGATAATTACACCGGAACTTATTCAGGAAGTT
TTTGACCTGCAATCGGTCATTATTCCTGATCCGTGCACTGGTACCCCTTTGGTTATTCCGAAGGAGAACCAAACAATTCA
TATTGCCGCTGACGCTATTTCGGCGGCCCGCGAAAGCGAATAG

Protein sequence : 
MNASVTTRLEGENMVVAYGEHTVLNGVDFQVPEGELTVILGPNACGKSTTLKALARVNPLKKGEVRLDGTPLPQMKSRAI
AKILAMLPQTPEAPSGVTVADVVARGRYPHQSLLRSWSDEDERACVEAMQAANVLELAERPIEALSGGQRQRVWIAMTLA
QQTPLILLDEPTTYLDITHQIEVLNLTKKLHSEGRTVAVVLHDLNLAFRYATHVVLMKQGRIIAQGDPRAIITPELIQEV
FDLQSVIIPDPCTGTPLVIPKENQTIHIAADAISAARESE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-67 52
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-57 47
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 4e-57 47
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 4e-57 47
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-57 47
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 5e-49 44
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 8e-54 43
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 8e-54 43
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-47 43
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-47 43
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-47 43
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-47 43
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-48 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RMDY18_07830 YP_003362435.1 cobalamin/Fe3+-siderophores ABC transporter ATPase BAC0164 Protein 3e-49 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RMDY18_07830 YP_003362435.1 cobalamin/Fe3+-siderophores ABC transporter ATPase VFG0925 Protein 6e-66 50
RMDY18_07830 YP_003362435.1 cobalamin/Fe3+-siderophores ABC transporter ATPase VFG1042 Protein 3e-49 44