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Name : RMDY18_19500 (RMDY18_19500) Accession : YP_003363602.1 Strain : Rothia mucilaginosa DY-18 Genome accession: NC_013715 Putative virulence/resistance : Unknown Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 2216751 - 2220101 bp Length : 3351 bp Strand : + Note : class II DNA sequence : ATGATGTCTCACCGCACTACCTCACGTCGCCGTACAGCACGAGCAGGGCAGGCGCCCGCGCCTCCTTCTAGGTATGCAGA GACGTCAGCACGCGTGGTCATCGGGGTGTATTCTTTTGCCGCGCTTCTGACCACGTTTGCGTGGATTATCTCTCCTCTGC GGCGCGGCCGCGGCTTCACCTGGTGGGAAGTTACCGCGGACCTGCTGAATATTCCCTCCACGCACACGCTACCCAGCGCC ATTACGATGATTGTGCTTGTGTCCGGGCTGATTGTGCGCAAGCGTGCCGCTCTCATTGCCGCCATCGTTTTTCAGGTGCT TGGCGCGCTGATTGCGACCCATAGCGCCTTCACGCTGGTGTTCCCCGCGGGGATTATGCCGAAGGACCGTATTTTCTCCT CGACGGTCGATACGCTCTCCATCGTGTTTGCGTGTGCGCTGGTGCCTTTCCTTTTCTCGATTCGTTCGGCGTTCCCGGCA CGCATTGGTCGCCTCTCGTGGGCGGGTGCGGCGGCTACGGCAGCTGGCGGCATCCTGCTGACTACTCTGGTGCTCTGGTA CCTCTGCCACATTGGTGTGTGGGAGCCGTTGCGTTTCATCACCCCGTGGGAGCTACTCATGCACGGCATGGGTATTGAGC GTACGCACCCCGGTGTTTGGGCTGCCGATGTGGTGGCTTTCTTAGCGTCGTTTGGTTACGGTGCTTCGCTGGTTGCGGCG CTGTACCTGTTGGCGCGCGGCTACCGTGCCCCGGACGCCTGGACCGGTGAGAAGGAGCTGAAGATTCGCGCTCTGCTGCA GCAGTATGGCGCCAATGATTCACTCTCCTATTTTTCGACGCGCCGCGATAAGCAGGTGATTTTCTCTCCGGATCAGAGGG CGGCGATTACGTACCGTTCGGTGGGTTCGGTGTGCTTGGCGTCGAGTGACCCGGTGGGTGACCCCGATTCGTGGGATGCC GCGATCGAGCAGTGGATGCTACAGGCACGTAGTTACGGTTGGGTTCCTGCGGCGCTGAGCGTGAGTGAGGCGGGTGCGCG AGCCTATAACCGGGCGGGTCTGTCGATTATTCAGATGGGTGAGGAGGCGGTCCTTGAGGCGGATCGTTTCACGCTCAATG ACACGTCGATGTTGCCGGTGCGTCAGGCGGTTCAGCGTGTGCGCCGCGGCGGGTATACAGTGCAGATCCGCCGTTTTTCA GAGTTGAACGAGCAGCAGCGTCAGCAGGTTGCGGAGAATATTTCTGCGTGGCGTCATGGGCGTGTGGAGCGCGGTTTTTC GATGGCTCTGAATCGTGTGAATGATCCGGCGGATTCTTCCTCTCTGCTGGTTTCGACTCATGACGAGGCAGGTCGAATGG TGGCTCTGCTGTCGTTCGTACCGTGGGGCCCTACCGGGCTGTCTCTAGATGTTATGCGCCGCTCCCCTGATGCCCCTAAT GGTGTGGTGGAGTTTATGGTGGCCTCGCTCATGGAGCAGGCGGCGTCGCTGGGTGTACGTCGGGTGTCGCTGAATTTTGC GATGTTTGGCCATATTTTTGAGGCTGCGGATCAGGTGGGTGCGTCAGCGTGGAACCGTTTCGCGTCCCGCTCTTTGGGGG TGCTGGATCGTTTTCTGCAGTTGCGCCGCCTGTATCGTTTCAATCTGAAGTTTGCCCCGCTGTGGGTTCCTCGTTTTCTG GCGACGGAGCCGACGTTGGCGATGGTGAATGTTGTGTTTGCTGCGGGCATGGCGGAGGGTTTCTTGCCGAATCTGTCGGC ACGCCGTTTGCAGGATCAGGAGCAGGTTCTTTCTGCAGGTGAGTTGGAGGCTCTGCGCCAAATGCAGCTCGCTACTGTGG AAGAGCTTCCTGAGGTGTCGCGTAGCGATCAGACTCAGCATCGTCTGCGCCATCTGGAAGCACTGCGTGCGGCGGGTATG GAGCCGTATCCGCTGGGTGGTGAGAAGGGCGGTACTGGCGTCTCTGTGCTGGGTGTAGAGGATGCTCTGCGTATATTCTC TTCTGAAAATATTCCAGATTCGGAATTTATTGTTTCGGGGCGTGTTCGCGCGCTTCGTAAGCACAGCGGAGTCCTCTTTA TTACCCTCGTTGAGGGCACTAAAACCCTGCAGGTTGTCATGGAGCGTAGCCTGGTGGGTGAGCGTCTGCTGAACCTCGCT GCACACGCCCTGGATACCGGCGACATCATCACCGTGCAGGGTACTTACGGGGCGAGCCGTAACGGCACTGAATCGCTGAT TGCCTCCACATGGCACATGGCGTCGAAGAGTCTGCATCCCATCCCCTTCGACTCCTTTACCGATCCGGAGGCGCGCCTGC GTCGCCGTTCCACGGACCTGTTGGTGCATCCGGATCAGATGCAGAATCTGCGTCTGCGCACTGCGGTGATTAAGGCACTG CGTGCCCGACTGGACACGGAGGGTTTTCTTGAGGTGGAGACCCCGATTCTGCATACGGTGCACGGTGGCGCGAGCGCGCG TCCGTTCCGCACGTATATCAACGCCTATGGTGAGGATTTGACGCTGCGTATTGCGCCGGAGCTGTATCTGAAGCGTTTGG TGGTGGGCGGTAGCGGTCCGGTGTATGAGTTGGGTCGTGATTTCCGTAATGAGGGTGCTGATGCGACCCATAACCCGGAG TTTACGGTGCTTGAGGCGTACCGCCCGTATGCGGATTATGTGCAGATGCGCGAGTTGACGGAGTGCCTGTTGAAGGATGC CGCACGGGCGGTGTTTGGTTCGGTGTCTTTGCCTCTGGGTCATAAGGCTTCGAGCGAGCGCGTGGTAACGGATGTTTCAG CGCCGTGGCGTGTGGTGTCGGTGTGTGATGCTCTGTCGGAGGCACTGGGTCGCCGCGTGGATGTGCAGACGGATTTTGAG GAGCTACTTGCCCTGGCACAGCAGCACGGTGTGCGTGTTCATGAGGGTATGGGCCCGGGAGCCATCGTTGAGGAGCTGTA TGGTGAGCTGGTTGAGGCGCATACGGTGGAGCCGACGTTCTATACGGATTTCCCGGCGGAGACGAGTCCGCTTGCGGCGC CGCATCGCAGTGTTCCGGGGTTGGCGGAGCGTTGGGATTTGGTGATTAACGGTATGGAGATGGGTTGCGCTTATTCGGAG CTGGCGGATCCGCTGGTGCAGCGTGAGCGTCTGACGGAGCAGTCGTTGAAGGCGGCTTCGGGTGACTTGGAGGCGATGGA GGTGGATGAGGATTTCCTTTACGCCTTGGAGACGGGTATGCCGCCGACGGGTGGTTTGGGTCTGGGTGTGGACCGTTTGG TGATGCTGTTGGCTCAGACGCAGATTCGTGGGGTGTTGTCGTTCCCGTTTGTGAAGCCTGAGCGTTCATAG Protein sequence : MMSHRTTSRRRTARAGQAPAPPSRYAETSARVVIGVYSFAALLTTFAWIISPLRRGRGFTWWEVTADLLNIPSTHTLPSA ITMIVLVSGLIVRKRAALIAAIVFQVLGALIATHSAFTLVFPAGIMPKDRIFSSTVDTLSIVFACALVPFLFSIRSAFPA RIGRLSWAGAAATAAGGILLTTLVLWYLCHIGVWEPLRFITPWELLMHGMGIERTHPGVWAADVVAFLASFGYGASLVAA LYLLARGYRAPDAWTGEKELKIRALLQQYGANDSLSYFSTRRDKQVIFSPDQRAAITYRSVGSVCLASSDPVGDPDSWDA AIEQWMLQARSYGWVPAALSVSEAGARAYNRAGLSIIQMGEEAVLEADRFTLNDTSMLPVRQAVQRVRRGGYTVQIRRFS ELNEQQRQQVAENISAWRHGRVERGFSMALNRVNDPADSSSLLVSTHDEAGRMVALLSFVPWGPTGLSLDVMRRSPDAPN GVVEFMVASLMEQAASLGVRRVSLNFAMFGHIFEAADQVGASAWNRFASRSLGVLDRFLQLRRLYRFNLKFAPLWVPRFL ATEPTLAMVNVVFAAGMAEGFLPNLSARRLQDQEQVLSAGELEALRQMQLATVEELPEVSRSDQTQHRLRHLEALRAAGM EPYPLGGEKGGTGVSVLGVEDALRIFSSENIPDSEFIVSGRVRALRKHSGVLFITLVEGTKTLQVVMERSLVGERLLNLA AHALDTGDIITVQGTYGASRNGTESLIASTWHMASKSLHPIPFDSFTDPEARLRRRSTDLLVHPDQMQNLRLRTAVIKAL RARLDTEGFLEVETPILHTVHGGASARPFRTYINAYGEDLTLRIAPELYLKRLVVGGSGPVYELGRDFRNEGADATHNPE FTVLEAYRPYADYVQMRELTECLLKDAARAVFGSVSLPLGHKASSERVVTDVSAPWRVVSVCDALSEALGRRVDVQTDFE ELLALAQQHGVRVHEGMGPGAIVEELYGELVEAHTVEPTFYTDFPAETSPLAAPHRSVPGLAERWDLVINGMEMGCAYSE LADPLVQRERLTEQSLKAASGDLEAMEVDEDFLYALETGMPPTGGLGLGVDRLVMLLAQTQIRGVLSFPFVKPERS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS1 | YP_005686365.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 6e-164 | 46 |
| lysS1 | YP_005682181.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 2e-163 | 46 |
| lysS1 | YP_005684273.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 6e-164 | 46 |
| lysX | YP_003784331.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 6e-164 | 46 |
