Gene Information

Name : RMDY18_17210 (RMDY18_17210)
Accession : YP_003363373.1
Strain : Rothia mucilaginosa DY-18
Genome accession: NC_013715
Putative virulence/resistance : Virulence
Product : cobalamin/Fe3+-siderophores ABC transporter ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 1930945 - 1931775 bp
Length : 831 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAGAAATCACCGAACGCACCCTCAAAGTTGAGAACGTCAGCCTCGGCTACGGCGAAACCACCATCGTCAAAGACCT
CTTCCTCGAATTCCCCAAGGGCAAAATCACCGCCATCATCGGCCCCAACGGCTGCGGTAAATCCACCCTGCTACGCGGTG
TCTCCCGACTACTCAAGCCGCTCAACGGCGACTTCACCCTCGACGGCAAACCCACCCACGAATACTCCATGAAAGGCTTC
GCCCGCATGGTCGGGCTGATGCCCCAGCATCCCATCGCCCCCGAAGGAATTACCGTAGCAGACCTGGTCTCCCGCGGCCG
CTACCCCTACCAAGGCCTCTTCAAACGCAATAGCGCCGAAGATGATGAGGCGGTCGCCTGGGCGCTAGAAGCCACCGACA
CTATGTCCCTCGCCGAACGACAGGTCACCGAACTCTCCGGCGGCCAACGTCAGCGTGTCTGGATTGCCATGGCGCTCGCC
CAAGAAACTGACATTCTACTGCTGGACGAGCCGACCACCTACCTCGACCTGGCACATCAGGTGGAGCTACTCGACCTACT
CTCGGACCTCAACGAACAGCGCGGCACCACCATGATCATGGTGCTGCACGAACTGAACCTCGCCGCTCGAGTCGCTGATT
ACCTCGTCGCTATGAAGGACGGCTCCATCGTTGCCCAAGGCGAAGCACACGACGTGCTCACCCGCGAGAACCTGCACACC
ATCTTTAGCCTGAAGGCCGAGGTTGCGGACCCGTTTAACGACGGCAGTGTAGTGGTGGTACCCCATCCCCGGAGTGCGTC
CACCGTTGCCGGTTCAGCTGTCGCATCCTAA

Protein sequence : 
MKEITERTLKVENVSLGYGETTIVKDLFLEFPKGKITAIIGPNGCGKSTLLRGVSRLLKPLNGDFTLDGKPTHEYSMKGF
ARMVGLMPQHPIAPEGITVADLVSRGRYPYQGLFKRNSAEDDEAVAWALEATDTMSLAERQVTELSGGQRQRVWIAMALA
QETDILLLDEPTTYLDLAHQVELLDLLSDLNEQRGTTMIMVLHELNLAARVADYLVAMKDGSIVAQGEAHDVLTRENLHT
IFSLKAEVADPFNDGSVVVVPHPRSASTVAGSAVAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-51 52
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-58 50
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 7e-61 50
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 7e-61 50
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-50 47
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-50 47
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-50 47
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-50 47
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-51 46
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-52 46
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 1e-52 46
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 1e-52 46
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-52 46
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 3e-34 43
cpfrc_01918 YP_003784318.1 hypothetical protein Not tested PiCp 7 Protein 8e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RMDY18_17210 YP_003363373.1 cobalamin/Fe3+-siderophores ABC transporter ATPase BAC0164 Protein 1e-51 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RMDY18_17210 YP_003363373.1 cobalamin/Fe3+-siderophores ABC transporter ATPase VFG1042 Protein 1e-51 52
RMDY18_17210 YP_003363373.1 cobalamin/Fe3+-siderophores ABC transporter ATPase VFG0925 Protein 1e-63 51