Gene Information

Name : RMDY18_01350 (RMDY18_01350)
Accession : YP_003361787.1
Strain : Rothia mucilaginosa DY-18
Genome accession: NC_013715
Putative virulence/resistance : Virulence
Product : metal ion ABC transporter periplasmic protein/surface adhesin
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 143593 - 144579 bp
Length : 987 bp
Strand : +
Note : -

DNA sequence : 
GTGACTTCCAATGAAGGATGCCTCATGAACGCTTTCACCCCCGCAGGCAGCAACGCACGCCGCCTCGTCCAGGCGCTCTG
CGCCGCCCTCGCACTCACCCTGCTACTCGTGCTCACCGGCTGCGGTAGCACCTCCAGCACCACCGAAGGCGCTAAGAGCA
GCAGCGGCAAGAAGACCGTGCTCACCACCTTCACCGTGCTCGCAGACATCGCCCGCAACGTGGCAGGCGACGACCTGAAC
GTTGAGTCCCTCACCAAGCCCGGCGCCGAGATTCACGAGTACGAGCCCACCCCCTCCGACCTGAAGAAGGCGCACGCCGC
CGACCTGGTGCTCGACAACGGCCTGAACCTGGAATCCTGGTTCGCGAAGTTCGTTGAAGAATCCCATGCTAAGCACGTGA
CCGTCTCCGAGGGGGTCACGCCCATCTCCATTACCGAGGACGCCTACGAGGGCAAGCCCAACCCCCACGCCTGGATGAGC
CCCAGCAACGTGCAGAAGTACGTGGACGTGATGATTCGTGAATTTAGCGCCCTCGACCCCACCCACGCCGCCGACTACAA
GTCCCGCGGTGAAGCCTACAAGAAGCAGCTGCAGGGCGTGCGTGACGAGCTCGTCAAGGAAATCTCCACCCTGCCCGAGA
ACCAGCGCGCACTCGTCACCTGCGAAGGCGCCTTCTCCTACCTGGCGGCAGACGCGGGCCTGAAGGAAAAGTACATTTGG
GCGGTCAACTCCGAACAGCAGGCGACCCCCTCGCAGATTTCCTCCGCGATCGATTACGTGCGCGAGAACCAGGTGCCCGC
CGTGTTCTGCGAATCCACCGTCTCTGACAACCCGATGCGCCAGGTCGCAGACGCCACCGGCGCACGATTCGGCGGCGTGC
TCTACGTGGACTCGCTCTCCGAGGCGAACGGCCCCGTGCCCACCTACCTGGACATGATCCGCTACGACGCACGCACCATC
GTGGCGGGCCTCAAGGGCAACTCCTAA

Protein sequence : 
MTSNEGCLMNAFTPAGSNARRLVQALCAALALTLLLVLTGCGSTSSTTEGAKSSSGKKTVLTTFTVLADIARNVAGDDLN
VESLTKPGAEIHEYEPTPSDLKKAHAADLVLDNGLNLESWFAKFVEESHAKHVTVSEGVTPISITEDAYEGKPNPHAWMS
PSNVQKYVDVMIREFSALDPTHAADYKSRGEAYKKQLQGVRDELVKEISTLPENQRALVTCEGAFSYLAADAGLKEKYIW
AVNSEQQATPSQISSAIDYVRENQVPAVFCESTVSDNPMRQVADATGARFGGVLYVDSLSEANGPVPTYLDMIRYDARTI
VAGLKGNS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-71 56
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 9e-72 56
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 9e-72 56
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 9e-72 56
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 6e-72 56

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RMDY18_01350 YP_003361787.1 metal ion ABC transporter periplasmic protein/surface adhesin BAC0349 Protein 4e-72 56
RMDY18_01350 YP_003361787.1 metal ion ABC transporter periplasmic protein/surface adhesin BAC0439 Protein 8e-67 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RMDY18_01350 YP_003361787.1 metal ion ABC transporter periplasmic protein/surface adhesin VFG0525 Protein 4e-72 56