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Name : clpC (BDP_0780) Accession : YP_003360265.1 Strain : Bifidobacterium dentium Bd1 Genome accession: NC_013714 Putative virulence/resistance : Virulence Product : Negative regulator of genetic competence clpC/mecB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 894254 - 896845 bp Length : 2592 bp Strand : + Note : - DNA sequence : ATGTTCGAACGGTTTACAGACCGTGCCCGGCGCGTGATCGTGCTGGCTCAGGAAGAAGCTCGTACCCTCCAGCACAACTA CATCGGTACCGAGCATCTGCTGCTCGGCCTGATTCGTGAGGGTGAGGGCGTCGCCGCGAAGGCGCTGGCCTCGAAGGGTG TGTCGTTGGACGATACCCGCAAGCAGGTCGAAGAGATGATCGGTAAGGGGAATGCGTCGCCGAACGGCCACATTCCTTTT ACTCCGCATGCCAGGCAGGTGTTGGAGCTGTCGTTGCGTGAAGCGTTGCAGCTGGGGCACAGCTATATCGGTACCGAGCA CATTCTGCTCGGCCTGATTCATGAGGGCGAAGGCGTCGGTACCCAGGTGCTGATCAAGATGGATGTCAATCTCGGCGAGC TGCGCAGTGCGACCATCGATCTGATCCGTGGCAATTCAGGCGGTAGCCAGGGTGAAGGCAAGGGCGATCTCGCCAATGCC GGCGGCGTGCAGGATAGGCGGAACCAGAGCGGTTCGGCCATTCTCGACCAGTTCGGTCGCAATCTGACCGCCGAAGCCGC TTCGGGTAAGCTCGACCCGGTGATCGGTCGTTCGAGCGAGATCGAACGCGTAATGGTGGTGCTGAGCCGGCGTACCAAGA ACAATCCGGTGCTGATCGGTGAGCCGGGCGTCGGCAAGACCGCCGTGGTCGAGGGTTTGGCCCAGAAGATCAACGCCGGC GATGTGCCGGAGACGTTGAAAGGCAAGCAGGTCTATTCCCTGGACTTGGGTTCCATGGTGGCAGGTTCACGCTATCGTGG CGATTTCGAGGAACGCCTGAAGAAGGTCTTGAAAGAGATCAAGACCCGTGGTGACATCGTGCTGTTCATCGACGAGATCC ATACCATCGTGGGCGCAGGTTCCGCGGACGGTGCCTTGGGCGCTTCCGACATGCTTAAGCCCATGCTGGCTCGCGGCGAA CTGCAGACCATCGGCGCCACCACCACCGACGAGTACCGCAAGTACATCGAAAAGGATGCGGCGCTGGAACGCCGTTTCCA GCCGATTCAGGTGCATGAGCCGACCATCGCCGAAACCATCGAGATCCTGAAGGGTCTGCGTGAACGCTACGAGAATCACC ATCATGTGACGATTACCGATGGTGCGCTGCAATCCGCAGCAGAGTTGTCTTCGCGTTACATTCAGGACAGTCATCTGCCC GATAAGGCCATCGATCTGATCGATGAGGCCGGTGCGCGCCTGCGTATCCGCCGTCTGACCGCCCCGCCGGAGCTCAAGGA GCTTGATGCGAAGGTGGCCAAGCTGGCCGAAGAGAAGGATCAGGCCATCAAGGACCAGGACTTCGAGAAGGCGGCCGAGC TGCGCGACAGGCAGGAGAAGCTGGAAGCTGAGCGCAAGGAGAAGGAATCGTCCTGGCGTGAAGGCGAATCCGACGTGAAG ATGGTCGTGGACGAGGATGTGATTGCCGAAGTGATCTCGCAGACCACCGGCATTCCGGTGTTCAAGCTCACTCAGGCTGA ATCCAAGAAGCTCATGAGCATGGAATCCGAGCTGCACAAGCGCATCATCGGTCAGGACGAGGCCGTGTCGGCGCTGTCCC GCTCCATCCGCCGTGCGCGTGTGGGCCTGAAGGACCCGAAGCGCCCGTCCGGTTCATTCATCTTCGCCGGCCCGACTGGT GTGGGCAAGACCGAGCTGGCCAAGACGCTGGCGGAGTTCCTGTTCGATGATGAGGACGCGTTGATCCGCGTGGATATGTC GGAGTTCTCCGAAAAGTACGCCGCATCGCGTCTGTTCGGCGCCCCTCCGGGATATGTCGGCTATGAGGAGGGCGGCGAGC TCACCGAAAAGGTGCGTCGCAAGCCGTTCTCCGTGGTGCTGTTCGACGAGATCGAGAAGGCGCATCCGGACATCTTCAAC ACATTGTTGCAGGTGCTCGATGATGGTCATCTGACCGATGGCCAGGGCCGCAAGGTAGATTTCAAGAACACCATCATCAT CCTGACCACCAATCTCGGCACCCGCGACATCGCGAAGGCCGCCAACACGGGCTTCAATCTTGGTACGAACACCGAGTCGA GCTACCAGCGCATGAAGGATCAGGTCTCTTCGGAATTGAAGCAGCAGTTCCGTCCGGAGTTCCTGAACCGTCTGGACGAC ATCATCGTGTTCAAGCAGCTTACCGAGCCGCAGGTGCGCCAGATCGTCGACCTTGACGTCAAGCAGCTCAACGACCGTCT GTTCGACCGCCACATGTCGCTCGAGCTCACTGATGCCGCCAAGGACCTGCTCGCGCAGAAGGGCTTTGACCCGCTGCTCG GTGCCCGTCCATTGCGCCGCGTGATTCAGCGCGACATCGAGGATGCCATATCGGAGAAGATTCTGATGGGCGACCTCGAA GACGGCCAGCGCGTGAAGGTCGATGCCGAAGGCGAGGGCATTCTGGGCGAATTCACCTTCTCCGGAGAGGCGTTTGAGGA GCCGGTGACGGCGGACGAGTCGTCTGAGTCGTCTGAGTCAGATTCCGCCGAGCCCGTCGAGGTTTCGGCCGGGATTGCCG ATTCGGCATCGGAATCTTCCGAAACCGAATAA Protein sequence : MFERFTDRARRVIVLAQEEARTLQHNYIGTEHLLLGLIREGEGVAAKALASKGVSLDDTRKQVEEMIGKGNASPNGHIPF TPHARQVLELSLREALQLGHSYIGTEHILLGLIHEGEGVGTQVLIKMDVNLGELRSATIDLIRGNSGGSQGEGKGDLANA GGVQDRRNQSGSAILDQFGRNLTAEAASGKLDPVIGRSSEIERVMVVLSRRTKNNPVLIGEPGVGKTAVVEGLAQKINAG DVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEIKTRGDIVLFIDEIHTIVGAGSADGALGASDMLKPMLARGE LQTIGATTTDEYRKYIEKDAALERRFQPIQVHEPTIAETIEILKGLRERYENHHHVTITDGALQSAAELSSRYIQDSHLP DKAIDLIDEAGARLRIRRLTAPPELKELDAKVAKLAEEKDQAIKDQDFEKAAELRDRQEKLEAERKEKESSWREGESDVK MVVDEDVIAEVISQTTGIPVFKLTQAESKKLMSMESELHKRIIGQDEAVSALSRSIRRARVGLKDPKRPSGSFIFAGPTG VGKTELAKTLAEFLFDDEDALIRVDMSEFSEKYAASRLFGAPPGYVGYEEGGELTEKVRRKPFSVVLFDEIEKAHPDIFN TLLQVLDDGHLTDGQGRKVDFKNTIIILTTNLGTRDIAKAANTGFNLGTNTESSYQRMKDQVSSELKQQFRPEFLNRLDD IIVFKQLTEPQVRQIVDLDVKQLNDRLFDRHMSLELTDAAKDLLAQKGFDPLLGARPLRRVIQRDIEDAISEKILMGDLE DGQRVKVDAEGEGILGEFTFSGEAFEEPVTADESSESSESDSAEPVEVSAGIADSASESSETE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 67 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_003360265.1 | Negative regulator of genetic competence clpC/mecB | VFG0079 | Protein | 0.0 | 57 |
| clpC | YP_003360265.1 | Negative regulator of genetic competence clpC/mecB | VFG0080 | Protein | 7e-143 | 51 |
