Gene Information

Name : kdpB (MCP_1968)
Accession : YP_003357023.1
Strain : Methanocella paludicola SANAE
Genome accession: NC_013665
Putative virulence/resistance : Unknown
Product : potassium-transporting ATPase B chain
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2216
EC number : -
Position : 1977836 - 1979869 bp
Length : 2034 bp
Strand : +
Note : -

DNA sequence :
ATGAGCCAAAAGGTATCCTGGATGTCGGGGCAGATATTGTGGGGCTCCCTGAAGGACTCGCTGTTGAAGTTCGACCCCCG
CTATACGGTCAAGAACCCGGTCATGTTCATACTTTACCTGTGCCTGGCCGTCACCCTGCTCATCGCCGCCTTCCCCGCTG
AGTTCTCGGACGTGGCCGGCGGCAGCCTGACCAGGGTTGACTACGTGGCCATATCCGCCATCCTCTTCCTCACCATGTGG
TTCTCCTTCTTCTCGGAGGCGCTGGCCGAGGCGCAGGGCAAGGCCCAGGCGGATTCCTTGAAAAAGATGAAGACGGAGAC
GCGTGCCAGGCTCCTGAAAGATGGCACGACGCTCGAGGTGAACTCGGACATGCTCAAGGCGGGCGACATGATAATGATCC
AGGCGGGCGATATCGTGCCGGACGACGGCAGTATAGAAAAAGGGGCGGTCATGCTGGACGAGTCGATGATGACCGGCGAA
TCCCAGCTGGTGCTGCGGGAGAGCGGGGGGGATAAGTCATCGGTGCTCGGCGGTACCCGGGTAGCCTCGGGTGAGGCGAT
AGTAAAGGTAACGGCGGACCCGGGCGAGACGTTCCTGGACCGGATGATCCGGCTCGTCGAGGGCGCGGAGCGGCAGAAGA
CCCCCAACGAGCTGGCGCTGACCGTAGTCCTCATATCCCTGACCATCGCCCTGCTCGTCGTGGTCGTCGCTATCGTACCC
CTGGCGCGGTTCTATTCCATTAGCGTCGACACGGGAAGCCTTATAACGCTTCTCGTATGCTTGATGCCCACGACGATCGG
CGGCCTGTTACCGGCTATCGGCGTCGCGGGCATCAACCGGGTCACGGGCATCAACGTGGTCGCCAAGTCCGGCAAGGCCG
TGGAGACGGCAGGCGACATCGACGTGCTCATCCTGGATAAGACGGGAACGCTCACCATGGGCAACCGCTACGCGAGCCAA
TTCATACCAGCCCCCGGAAAAAGTATGGACGAGCTGGCGGCGGTTGCCATGTACGCCTCGGCCATGGATGACACGCCCGA
GGGGCGCTCCGTGATATCCTTCGGTAAAAAGCTCGGCTATAATATAGACGAGGGACGCCTTGAAGGCTCGCAGGCGATCC
TGTTCACTCCCGAAACCCGGGTGAGCGGTACGCGGATGAAAGATGGGCTGACCTATATCAAAGGCTCGGTCGATGCGGTC
GGCACAAAATGCGGCCGCATTCCGGAGCCCGTCCGGCTACAGGCTGAAAACGCCTCCCGCGGAGGCTCTACGCCCCTGGC
GGTGGCTTCGGACGGCGACATCGTGGGGCTCATCGTGCTCAAGGACCTGGTGAAGCCGGGTATCAAGGACCGGCTCGCCG
AACTCCGGCGCATAGGCATCCGCACGGTCATGTGCACGGGCGATAACCGGCTAACGGCCGCGGCCATCGCCCGGGAGACG
GGCGTCGACGACTATGTCGCCAACGCGATCCCGGAGGATAAGCTGTCCATCATAAAAAAAGAGCAGGCTCTGGGTAAGCT
GGTAGCCATGACCGGCGACGGCACCAACGATGCCCCGGCGCTGGCCCAGGCCGACGTGGGGCTGGCCATGAACAGCGGCA
CTTCGGCCGCGAAGGAAGCGGCGAACATGGTGGACCTGGACTCGGACCCCACAAAGCTCATCGAGGTCGTCACCATCGGC
AAGCAGCTATTGATCACGCGGGGCGCGCTCACGACGTTCAGCGTTACGAACGATGTGGCCAAGTACTTCGCCATCCTGCC
GGCGATCCTGGCATCATCCATACCGGCGATCTCGCTGCTCAACGTCATGGGCCTCGCATCGCCGAGGAGCGCCATATACT
CTGCGCTGATCTTCAACGCCCTGGCCATCCCGCTGCTCATACCCGTGGCGATCAACGGCGTCAAATACAGGCCCGTGAGC
GCCTCGGCCATGCTACGCAGGAATCTGCTCGTCTATGGCGCGGGAGGCCTGGTAAGCTCGTTCATCGGCATCAAGCTGAT
CGACATAATTATAAGCGGATGGGGGATAATATGA

Protein sequence :
MSQKVSWMSGQILWGSLKDSLLKFDPRYTVKNPVMFILYLCLAVTLLIAAFPAEFSDVAGGSLTRVDYVAISAILFLTMW
FSFFSEALAEAQGKAQADSLKKMKTETRARLLKDGTTLEVNSDMLKAGDMIMIQAGDIVPDDGSIEKGAVMLDESMMTGE
SQLVLRESGGDKSSVLGGTRVASGEAIVKVTADPGETFLDRMIRLVEGAERQKTPNELALTVVLISLTIALLVVVVAIVP
LARFYSISVDTGSLITLLVCLMPTTIGGLLPAIGVAGINRVTGINVVAKSGKAVETAGDIDVLILDKTGTLTMGNRYASQ
FIPAPGKSMDELAAVAMYASAMDDTPEGRSVISFGKKLGYNIDEGRLEGSQAILFTPETRVSGTRMKDGLTYIKGSVDAV
GTKCGRIPEPVRLQAENASRGGSTPLAVASDGDIVGLIVLKDLVKPGIKDRLAELRRIGIRTVMCTGDNRLTAAAIARET
GVDDYVANAIPEDKLSIIKKEQALGKLVAMTGDGTNDAPALAQADVGLAMNSGTSAAKEAANMVDLDSDPTKLIEVVTIG
KQLLITRGALTTFSVTNDVAKYFAILPAILASSIPAISLLNVMGLASPRSAIYSALIFNALAIPLLIPVAINGVKYRPVS
ASAMLRRNLLVYGAGGLVSSFIGIKLIDIIISGWGII

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAR0071 YP_039539.1 potassium-transporting ATPase subunit B Not tested Type-II SCCmec Protein 2e-135 52
kdpB(SCCmec) NP_370597.1 potassium-transporting ATPase subunit B Not tested Type-II SCCmec Protein 2e-135 52
kdpB NP_373310.1 potassium-transporting ATPase subunit B Not tested Type-II SCCmec Protein 2e-135 52
kdpB YP_190029.1 potassium-transporting ATPase subunit B Not tested Type-II SCCmec Protein 2e-135 52
kdpB YP_251949.1 potassium-transporting ATPase subunit B Not tested SCCmec Protein 3e-137 52
kdpB BAA82181.1 potassium-transporting ATPase(B chanin) Not tested Type-II SCCmec Protein 2e-135 52
kdpB NP_814334.1 potassium-transporting ATPase subunit B Not tested Not named Protein 4e-123 48
ef0088 AAM75291.1 EF0088 Not tested Not named Protein 3e-123 48