Gene Information

Name : ECSF_4200 (ECSF_4200)
Accession : YP_003352190.1
Strain : Escherichia coli SE15
Genome accession: NC_013654
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4582792 - 4583664 bp
Length : 873 bp
Strand : +
Note : -

DNA sequence :
ATGAATCCGTCTGATGCCATTGAGGCAATTGAAAAACCGCTCTCCTCCCTGCCTTACTCACTTTCCCGTCACATCCTGGA
ACATCTGCGCAAACTCACCAGTCACGAACCCGTGATTGGCATTATGGGTAAAAGCGGGGCCGGTAAATCCTCACTCTGTA
ATGCACTGTTTCAGGGGGAGGTCACCCCGGTCAGTGATGTTCACGCCGGCACCCGGGAAGTGCGGCGCTTCCGTCTGAGT
GGCCACGGTCACAGCATGATTATCACTGACCTGCCCGGGGTGGGCGAGAGCCGGGACAGGGATGCAGAGTATGAAGCCCT
GTACCGTGACATTCTGCCTGAACTTGACCTGGTACTGTGGCTGATTAAAGCCGATGACCGTGCCCTGTCTGTGGATGAGT
ATTTCTGGCGACACATCCTGCACCGGGGACATCAGCAGGTGCTGTTTGTGGTGACGCAGGCCGACAAAACGGAGCCCTGC
CATGAATGGGATATGGCCGGCATTCAGCCTTCTCCCGCACAGGCACAGAACATTCGTGAGAAAACAGATGCGGTATTCCG
GCTGTTCCGGCCCGTACATCCGGTTGTGGCCGTATCGGCCTGCACCGGCTGGGAACTGGATACGCTGGTCAGTGCGCTCA
TGACAGCGCTTCCCGACCATGCCGCCAGTCCCCTGATGACCCGCCTGCAGGACGAGCTGCGCACGGAATCTGTCCGGTCT
CAGGCCCGTGAACAGTTTACCGGTGCGGTGGACCGGATATTTGACACTGCGGAGAGCGTCTGTATTGCCTCTGTTGCACG
CGCGGTTCTGCGTGCCGTCCGTGACTCGGTGGTCTCTGTTGCCCGCGCTGTATGGAACTGGATTTTCTTCTGA

Protein sequence :
MNPSDAIEAIEKPLSSLPYSLSRHILEHLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFRLS
GHGHSMIITDLPGVGESRDRDAEYEALYRDILPELDLVLWLIKADDRALSVDEYFWRHILHRGHQQVLFVVTQADKTEPC
HEWDMAGIQPSPAQAQNIREKTDAVFRLFRPVHPVVAVSACTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRS
QAREQFTGAVDRIFDTAESVCIASVARAVLRAVRDSVVSVARAVWNWIFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECO103_3582 YP_003223441.1 hypothetical protein Not tested LEE Protein 3e-122 99
aec64 AAW51747.1 Aec64 Not tested AGI-3 Protein 3e-122 99
yeeP ADD91709.1 YeeP Not tested PAI-I AL862 Protein 3e-122 99
unnamed AAL99256.1 unknown Not tested LEE Protein 2e-120 98
unnamed AAL08471.1 unknown Not tested SRL Protein 5e-122 98
yeeP CAE85196.1 YeeP protein Not tested PAI V 536 Protein 6e-122 98
Z1650 NP_287153.1 hypothetical protein Not tested TAI Protein 3e-119 97
unnamed CAD66199.1 hypothetical protein Not tested PAI III 536 Protein 3e-121 97
Z1210 NP_286745.1 histone Not tested TAI Protein 3e-119 97
APECO1_1093 YP_853113.1 hypothetical protein Not tested PAI IV APEC-O1 Protein 3e-119 97
sap NP_708764.1 hypothetical protein Not tested SHI-1 Protein 2e-119 96
sap NP_838477.1 hypothetical protein Not tested SHI-1 Protein 6e-120 96
unnamed AAK00473.1 unknown Not tested SHI-1 Protein 2e-119 96
unnamed AAL67395.1 unknown Not tested PAI II CFT073 Protein 1e-43 41
APECO1_3493 YP_854318.1 hypothetical protein Not tested PAI I APEC-O1 Protein 2e-43 41
ORF_43 AAZ04452.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 1e-43 41
c5162 NP_757010.1 hypothetical protein Not tested PAI II CFT073 Protein 2e-43 41
unnamed CAD42093.1 hypothetical protein Not tested PAI II 536 Protein 6e-44 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECSF_4200 YP_003352190.1 hypothetical protein VFG1062 Protein 3e-122 98
ECSF_4200 YP_003352190.1 hypothetical protein VFG1674 Protein 2e-121 97
ECSF_4200 YP_003352190.1 hypothetical protein VFG0654 Protein 9e-120 96
ECSF_4200 YP_003352190.1 hypothetical protein VFG1612 Protein 4e-44 41