Gene Information

Name : ECSF_4189 (ECSF_4189)
Accession : YP_003352179.1
Strain : Escherichia coli SE15
Genome accession: NC_013654
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4572501 - 4573919 bp
Length : 1419 bp
Strand : -
Note : -

DNA sequence :
TTGTCACAGAATAAGCCCGGTAAAATACGGGCTTATGAACGACATCTTTCTGACGACATCTTCCTGCTGAAACAGCGCCT
GGCCGAACAGGAAGCGCTGATCCACGCCCTGCAGGAAAAGCTGAGCAACCGGGAGCGCGAAATAGACCATCTGCAGGCGC
AGCTGGATAAACTCCGCCGGATGAACTTCGGCAGTCGCTCCGAAAAAGTCTCCCGCCGTATCGCACAAATGGAAGCCGAT
CTGAACCGGCTTCAGAAAGAGAGCGATACGCTGACTGGTAGGGTGTATGACCCGGCAGTACAGCGTCCGTTGCGTCAGAC
CCGCACCCGTAAGCCGTTCCCTGAATCACTACCCCGTGACGAAAAGCGACTGTTGCCTGCGGCGCCGTGCTGCCCGAACT
GCGGCGGTTCACTGAGCTATCTGGGCGAGGATACCGCCGAACAGCTGGAGTTGATGCGTAGCGCCTTCCGGGTTATCCGG
ACGGTACGGGAAAAACATGCCTGTACTCAGTGCGATGCCATCGTGCAGGCACCTGCACCTTCGCGGCCCATCGAGCGGGG
TATCGCCGGACCGGGGCTGCTGGCCCGCGTGCTGACCTCGAAGTATGCAGAGCACACCCCGCTGTATTGCCAGTCAGAAA
TATACGGCCGGCAAGGTGTGGAGCTGAGCCGTTCACTGCTGTCGGGCTGGGTGGATGCATGCTGCCGGCTGCTGTCTCCG
CTGGAAGAGGTGCTTCATGGCTATGTCATGACTGACGGCAAACTCCATGCCGATGATACCCCGGTCCAGGTACTGCTGCC
GGGTAATAAGAAGACGAAGACCGGGCGGTTGTGGGCGTATGTTCGTGATGACCGCAATGCCGGGTCAGCGTTGGCACCTG
CAGTGTGGTTCGCTTACAGCCCGGACAGAAAAGGCATCCATCCGCAGACTCATCTTGCTTGCTTCAGCGGTGTGCTGCAA
GCGGATGCGTACGCCGGGTTCAACGAGCTGTATCGCAATGGTGGGATAACGGAAGCTGCCTGCTGGGCTCATGCCCGCCG
AAAGATCCACGATGTGCACGTCCGCATCCCGTCAGCACTGACGGAAGAAGCCCTAGAGCAGATCGGTCAGTTGTACGCCA
TAGAGGCGGATATAAGGGGAATGCCGGCAGAGCAGCGGCTTGCTGAACGTCAGCGAAAAACGAAACCGCTGTTGAAATCC
CTGGAAAGCTGGTTGCGTGAAAAGATGAAGACCCTGTTCTTCGGCTCTGGCCATGGTGGTGAGCGGGGAGCGCTACTGTA
CAGCCTGATCGGGACGTGCAAACTGAATGACGTGGATCCAGAAAGCTACCTTCGCCATGTGCTTGGCGTCATAGCAGACT
GGCCGGTCAACCGGGTCAGCGAACTGCTTCCGTGGCGCATAGCACTGCCAGCTGAATAA

Protein sequence :
MSQNKPGKIRAYERHLSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEAD
LNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIR
TVREKHACTQCDAIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSP
LEEVLHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTHLACFSGVLQ
ADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKS
LESWLREKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08460.1 unknown Not tested SRL Protein 0.0 99
l0015 CAD33775.1 L0015 protein Not tested PAI I 536 Protein 2e-159 99
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 0.0 99
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 0.0 99
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 0.0 99
unnamed AAC31494.1 L0015 Not tested LEE Protein 0.0 99
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 4e-163 99
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 0.0 97
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 0.0 97
tnp AEA34686.1 transposase Not tested Not named Protein 0.0 97
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 0.0 97
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 0.0 97
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 0.0 96
unnamed AAL57570.1 unknown Not tested LEE Protein 0.0 96
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 3e-122 75
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 4e-108 63
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 6e-101 59
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 1e-101 59
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 6e-99 54
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 5e-99 54
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 2e-102 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECSF_4189 YP_003352179.1 hypothetical protein VFG1051 Protein 0.0 99
ECSF_4189 YP_003352179.1 hypothetical protein VFG1516 Protein 9e-160 99
ECSF_4189 YP_003352179.1 hypothetical protein VFG0793 Protein 0.0 99
ECSF_4189 YP_003352179.1 hypothetical protein VFG1700 Protein 1e-122 75
ECSF_4189 YP_003352179.1 hypothetical protein VFG1736 Protein 2e-111 64