Gene Information

Name : ECSF_1875 (ECSF_1875)
Accession : YP_003349865.1
Strain : Escherichia coli SE15
Genome accession: NC_013654
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2007118 - 2008140 bp
Length : 1023 bp
Strand : -
Note : -

DNA sequence :
ATGGTCACTTTTGAGACAGTTATGGAAATTAAAATCCTGCACAAGCAGGGAATGAGTAGCCGGGCGATTGCCAGAGAACT
GGGGATCTCCCGCAATACGGTTAAACGTTATTTGCAGGCAAAATCTGAGCCGCCAAAATATACGCCGCGACCTGCTGTTG
CTTCACTCCTGGATGAATACCGGGATTATATTCGTCAACGCATCGCCGATGCTCATCCTTACAAAATCCCGGCAACGGTA
ATCGCTCGCGAGATCAGAGACCAGGGATATCGTGGCGGAATGACCATTCTCAGGGGATTCATTCGTTCTCTCTCGGTTCC
TCAGGAGCAGGAGCCTGCCGTTCGGTTCGAAACTGAACCCGGACGACAGATGCAGGTTGACTGGGGCACTATGCGTAATG
GCCGCTCACCGCTTCACGTGTTCGTTGCTGTTCTCGGATACAGCCGAATGTTGTACATCGAATTCACTGACAATATGCGT
TATGACACGCTGGAAACCTGCCATCGTAATGCGTTCCGCTTCTTTGGTGGTGTGCCGCGCGAAGTGTTGTATGACAATAT
GAAAACTGTGGTTCTGCAACGTGACGCATATCAGACCGGTCAGCACCGGTTCCATCCTTCGCTGTGGCAGTTCGGCAAGG
AGATGGGCTTCTCTCCCCGACTGTGTCGCCCCTTCAGGGCACAGACTAAAGGTAAGGTGGAACGGATGGTGCAGTACACC
CGTAACAGTTTTTACATCCCACTAATGACTCGCCTGCGCCCGATGGGGATCACTGTCGATGTTGAAACAGCCAACCGCCA
CGGTCTGCGCTGGCTGCACGATGTCGCTAACCAACGAAAGCATGAAACAATCCAGGCCCGTCCCTGCGATCGCTGGCTCG
AAGAGCAGCAGTCCATGCTGGCACTGCCTCCGGAGAAAAAAGAGTATGACGTGCATCCTGGTGAAAATCTGGTGAACTTC
GACAAACCCCCCCTGCATCATCCACTCTCCATCTACGACTCATTCTGCAGAGGAGTGGCGTGA

Protein sequence :
MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATV
IAREIRDQGYRGGMTILRGFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMR
YDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYT
RNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHPGENLVNF
DKPPLHHPLSIYDSFCRGVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1093 CAD33720.1 ORF A protein Not tested PAI I 536 Protein 3e-163 99
s0035 CAD33773.1 ORF A protein Not tested PAI I 536 Protein 5e-164 99
y1093 YP_002346890.1 transposase for insertion sequence IS100 Not tested HPI Protein 8e-163 99
y1094 CAD42088.1 OrfA protein of IS100 transposase Not tested PAI II 536 Protein 5e-164 99
y2411 NP_669718.1 transposase Not tested HPI Protein 8e-163 99
orfA CAE85182.1 OrfA protein, transposase, IS100 Not tested PAI V 536 Protein 5e-164 99
YPTB1585 YP_070113.1 transposase Not tested HPI Protein 8e-163 99
y1094 CAC43410.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 5e-164 99
unnamed CAA21403.1 - Not tested HPI Protein 8e-163 99
unnamed CAB46599.1 IS100 transposase Not tested HPI Protein 6e-163 99
api83 CAF28557.1 transposase Not tested YAPI Protein 6e-163 99
unnamed AAG37051.1 unknown Not tested espC PAI Protein 4e-153 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECSF_1875 YP_003349865.1 transposase VFG1626 Protein 3e-164 99
ECSF_1875 YP_003349865.1 transposase VFG1607 Protein 3e-164 99
ECSF_1875 YP_003349865.1 transposase VFG1461 Protein 2e-163 99
ECSF_1875 YP_003349865.1 transposase VFG1514 Protein 3e-164 99
ECSF_1875 YP_003349865.1 transposase VFG0780 Protein 2e-153 96