Gene Information

Name : ECSF_1176 (ECSF_1176)
Accession : YP_003349166.1
Strain : Escherichia coli SE15
Genome accession: NC_013654
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1260496 - 1261299 bp
Length : 804 bp
Strand : -
Note : -

DNA sequence :
ATGTGTCGGGTTCTGAAGGTCGCCCGTGCGGGATTTTACGTCTGGCTTCATCGCCCTGTTTCTGCCGGAGAAAAGGATAA
TCAGCGGTTGCTGGAGCTCATCCGCGATGCTTATGCACTGAGCGGCGGAGTCTACGGTTATCGCAGGGTTCACGGCGATC
TTCGTGAAATCGGTGAAGTATGCAGCAGAAACCGTGTTGCCAGAATCATGAAGCGGAACAGGATACAGGCCGTACATGGC
TATAAGGTCCCGCGTGGCGTCAGGGGAAGGCCGTCACTGATAGCTCCTAATCGCGTACAGAGGGAATTTACGATGGTAAA
ACCCAACCAGGTGTGGGTGACTGATATTACCTACATCCGCACCTGGCAGGGTTGGCTGTATCTGGCGGTGGTTATCGATC
TTTTTGCCCGTAATGTGGTGGGCTGGTCGATGAAACCAACGCTGTCGCGCGAGCTGGCACTGGATGCGCTGCTGATGGCA
GTCTGGCGGCGTAAGCCTGCAGAAAACGTCATAGTGCACAGCGATCAGGGCAGTCAGTATGGCAGTGATGACTGGCAGCG
GTTCTGCAGGGCCAACAATCTGGCGCCGAGTATGAGCCGTCGTGGCAACTGCTGGGATAATGCGGTGGCAGAATCGTTCT
TCAGTTCACTGAAAAAAGAGCGCATCAGAAAGCGGATATATAAAACCCGGGACATGGCCCGGGCGGATATCTTCGATTAC
ATTGAAGTGTTCTACAACCGGACCCGGCGCCACAGTCATCTGGGTGGCGTCAGCCCGGAGGCCTTCGAAAAGGCCTCACC
GTGA

Protein sequence :
MCRVLKVARAGFYVWLHRPVSAGEKDNQRLLELIRDAYALSGGVYGYRRVHGDLREIGEVCSRNRVARIMKRNRIQAVHG
YKVPRGVRGRPSLIAPNRVQREFTMVKPNQVWVTDITYIRTWQGWLYLAVVIDLFARNVVGWSMKPTLSRELALDALLMA
VWRRKPAENVIVHSDQGSQYGSDDWQRFCRANNLAPSMSRRGNCWDNAVAESFFSSLKKERIRKRIYKTRDMARADIFDY
IEVFYNRTRRHSHLGGVSPEAFEKASP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 3e-43 46
tnpB CAB61574.1 transposase B Not tested HPI Protein 3e-40 46
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 9e-45 45
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 2e-43 45
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 1e-42 45
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 1e-39 45
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 4e-29 45
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 4e-29 45
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 5e-30 44
unnamed CAI43898.1 putative transposase Not tested LEE Protein 5e-30 44
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 5e-30 43
unnamed AAC31485.1 L0006 Not tested LEE Protein 1e-29 43
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 1e-29 43
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 2e-44 43
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-44 43
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-44 43
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 9e-30 43
Z5089 NP_290241.1 transposase Not tested LEE Protein 1e-29 43
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 8e-45 41
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 2e-45 41
unnamed AAF09030.1 unknown Not tested SHI-O Protein 8e-45 41
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 2e-45 41
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 8e-45 41
unnamed AAF09022.1 unknown Not tested SHI-O Protein 3e-45 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECSF_1176 YP_003349166.1 transposase VFG1631 Protein 5e-45 45
ECSF_1176 YP_003349166.1 transposase VFG1484 Protein 2e-29 45
ECSF_1176 YP_003349166.1 transposase VFG0785 Protein 5e-30 43