Gene Information

Name : Sros_4705 (Sros_4705)
Accession : YP_003340294.1
Strain : Streptosporangium roseum DSM 43021
Genome accession: NC_013595
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 5230874 - 5231764 bp
Length : 891 bp
Strand : +
Note : KEGG: aav:Aave_4118 integrase catalytic subunit

DNA sequence :
ATGAAGTTCCGGTTGATTCATGCGGAGAAGGACCACCACAAGGTCTCCCTGCTGGCTCGGGTGCTGGGTGTGTCGCGCCA
GGGCTACTACGCCTGGGCGGCCCGGCAGCGGCGCGGCCCGTCGACTCGAGCCCGTCGCGACGCCGAGCTGACCGAGCGGA
TCCGTCGGCATCACCAAGCGTCTGATGAGATCTACGGGGCGCCACGTATTCACGCCGACCTGCGCGAACTGGATGGGGTC
CGGGTGGGCCGCAAACGAGTGGCCCGGCTGATGCGCGTGGCCGGGCTGGCCGGGGTGAGCAGGCGTAAGGGCGCCCGCAC
CACTGTCACCGATCCGCGCGCCAGATCTGCATCCGACTTGGTCGGGCGCGACTTCTGTGCCGAGGAGCCAAACCGGATCT
GGACCGCTGACATCACGTACGTGCCGACCTGGCAGGGCTTCGTCTATCTGGCGGTGGTGCTGGATGTCTTCTCCCGCCGG
ATCGTCGGCTGGGCGATGGCCGAGCACATGCGCACCGAGTTGGTGACCGATGCGCTGGCGATGGCGCTGCACCAGCGCCA
CCCCGAGGCCGGGGTGATTCACCACAGCGATAAGGGGGGTCAATACACCTCGTTTGCCTTCGGTCAGCGCTGTGAGCAGG
CAGGCGTCCGCCCGTCGACGGGCCGGACCGGAACGTGCTTCGACAATGCGATCACTGAGAGCTTCTTCGCCTCGCTGGAG
TGCGAGCTGATTGACCGGCGCACCTTCCGCACCAGGTCAGAAGCCGAACGGGCCCTGTTCAGCTACATCGAGGGCTTCTA
CAACCCGCGCCGCCGTCACTCCGCCAACGGCCAGCTCAGCCCCGCCGAAATACGAACGCCGACACGCGCTCAAGAACGCC
CAAGACCTTGA

Protein sequence :
MKFRLIHAEKDHHKVSLLARVLGVSRQGYYAWAARQRRGPSTRARRDAELTERIRRHHQASDEIYGAPRIHADLRELDGV
RVGRKRVARLMRVAGLAGVSRRKGARTTVTDPRARSASDLVGRDFCAEEPNRIWTADITYVPTWQGFVYLAVVLDVFSRR
IVGWAMAEHMRTELVTDALAMALHQRHPEAGVIHHSDKGGQYTSFAFGQRCEQAGVRPSTGRTGTCFDNAITESFFASLE
CELIDRRTFRTRSEAERALFSYIEGFYNPRRRHSANGQLSPAEIRTPTRAQERPRP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 5e-40 46
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-34 45
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 1e-52 44
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-52 44
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-52 44
Z1198 NP_286733.1 transposase Not tested TAI Protein 5e-42 43
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 1e-41 43
Z1638 NP_287141.1 transposase Not tested TAI Protein 5e-42 43
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 1e-41 43
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 5e-42 43
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 1e-41 43
Z1221 NP_286756.1 transposase Not tested TAI Protein 4e-42 43
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 6e-42 43
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-43 43
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 1e-42 43
unnamed AAF09030.1 unknown Not tested SHI-O Protein 3e-44 42
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 3e-44 42
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 3e-44 42
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 2e-44 42
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 9e-45 42
unnamed AAF09022.1 unknown Not tested SHI-O Protein 2e-44 42
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 9e-45 42
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 8e-44 42
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 3e-44 42
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 2e-41 42
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 3e-42 42
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 4e-42 42
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 3e-42 42
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 4e-42 42
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 4e-42 42
tnpB CAB61574.1 transposase B Not tested HPI Protein 2e-35 42
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 2e-35 42
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 2e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sros_4705 YP_003340294.1 integrase catalytic subunit VFG1706 Protein 1e-44 42
Sros_4705 YP_003340294.1 integrase catalytic subunit VFG1602 Protein 9e-39 41