Gene Information

Name : Sros_4413 (Sros_4413)
Accession : YP_003340030.1
Strain : Streptosporangium roseum DSM 43021
Genome accession: NC_013595
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 4925026 - 4925760 bp
Length : 735 bp
Strand : -
Note : KEGG: pla:Plav_1100 ABC transporter

DNA sequence : 
GTGAGTAGTAGGTATGCGCTCGCATTGGAATCGGTGACGAAAGTCTACGGTTCCGGTCGTCATGCGGTCACAGCTTTGAA
CGGCGTGACGATGGGCGTACCGCACGGGACATTCATCGCGATCATGGGTCCTTCCAGCTCGGGTAAGAGCACGTTCCTGC
ACTGCGCGGCGGGTCTCGACAAACCCACGAAGGGTGGCGTGATCCTCGGCAATACCCGCCTGGCCGGCCTGCACGAGGAG
CAGCTCACCGAGATCCGCCGAGAACGGGTCGGGTTCGTCTTCCAGGCCTACAACCTGCTCGACTCGCTCACCGTCGCCGA
CAACGTGGGCCTGCCGTTCCGGCTGGCCGGCGCCCCGATCCCCGCCGACCGGGTGCGCGCCGAGCTGGCGAACGTCGGGC
TCGCCGACATGGGCGACCGCTACCCCGGGCAGCTCTCCGGCGGTCAGCGGCAGCGCGTGGCCATCGCCCGCGCCCTCATC
ACCGAACCCGACGTGATCTTCGCCGACGAGCCGACAGGGGCGCTCGACACACGTACCGGCAAGCAGGTCCTGCAACTGCT
GCGGGAGGTCGCCGACAAGGCCGGCCAGACCGTGGTGATGGTGACCCACGACCCGGTCGCCGCCTCGCACGCGGACTCGG
TGACCTTCCTGGCCGACGGCCGACTGGCCGGCGAGCTCATCGGGCCGACGCCGGAGAAGGTGGCCGACCGGATGACCAGG
CTGGGTGAGTGGTGA

Protein sequence : 
MSSRYALALESVTKVYGSGRHAVTALNGVTMGVPHGTFIAIMGPSSSGKSTFLHCAAGLDKPTKGGVILGNTRLAGLHEE
QLTEIRRERVGFVFQAYNLLDSLTVADNVGLPFRLAGAPIPADRVRAELANVGLADMGDRYPGQLSGGQRQRVAIARALI
TEPDVIFADEPTGALDTRTGKQVLQLLREVADKAGQTVVMVTHDPVAASHADSVTFLADGRLAGELIGPTPEKVADRMTR
LGEW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-40 46
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-41 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-41 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-41 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sros_4413 YP_003340030.1 ABC transporter CP001581.1.gene798.p Protein 6e-38 45
Sros_4413 YP_003340030.1 ABC transporter NC_012469.1.7686878. Protein 5e-43 44
Sros_4413 YP_003340030.1 ABC transporter NC_008702.1.4606598. Protein 1e-37 42
Sros_4413 YP_003340030.1 ABC transporter CP001581.1.gene598.p Protein 8e-41 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sros_4413 YP_003340030.1 ABC transporter VFG2059 Protein 1e-20 41