Gene Information

Name : Sros_4388 (Sros_4388)
Accession : YP_003340008.1
Strain : Streptosporangium roseum DSM 43021
Genome accession: NC_013595
Putative virulence/resistance : Virulence
Product : lipoprotein transporter ATP-binding subunit
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 4897551 - 4898267 bp
Length : 717 bp
Strand : +
Note : KEGG: ent:Ent638_1632 lipoprotein transporter ATP- binding subunit

DNA sequence : 
ATGATCGTCAACACTCTGCTGCGGGCCGAGGAGATCAGCCGTTCCTACGGCAACACGCCCGCGCTGCGCGAGGCCAGCCT
GTCGGTCACCGCGGGCGAGGTCCTGGCCGTCATGGGACCCAGCGGTTCCGGCAAGTCGACACTGCTGCACTGCCTGGCCG
GGATCTTCACCCCGGACAGCGGCGAGGTGTGGTTCGACGGGCGGCGGCTGGACACGCTGAACGACGGCCGCCGCAGCGAG
CTGCGGCGCACCGCCTTCGGCTTCGTCTTCCAGTTCGGCCAGCTCGTGCCGGAGCTGACCGTGGCCGACAACGTGGCGCT
GCCCCTGCTGCTGGGCCGTACCAGGCGCAACCATGCCTACGCGCGGGCCGCCTCCTGGCTGGAGCGGCTGGAGCTGGCCG
AACTGGGCGGCCGCCGTACCGGGGAGCTGTCCGGCGGGCAGGCGCAGCGGGTGGCCATCGCCAGAGCGCTGGTGACCGGG
CCGCGGGTCCTCTTCGCCGACGAGCCGACCGGCGCGCTCGACTCGCTCACCGGCGAGCTCGTGATGGAGCTGCTGGTGGG
CCTGGCCCGCGAGGAGGGCACCACCGTGATCGTGGTGACCCATGACGCCCGGGTGGCCGCCTGCGCCGACCGGGAGGTCG
TCGTCCGCGACGGCCGGGTCACCGACCCGTACGCCGGCCGGGTCACCGACCCGTACGCAGGCGGGGTCGGCCGATGA

Protein sequence : 
MIVNTLLRAEEISRSYGNTPALREASLSVTAGEVLAVMGPSGSGKSTLLHCLAGIFTPDSGEVWFDGRRLDTLNDGRRSE
LRRTAFGFVFQFGQLVPELTVADNVALPLLLGRTRRNHAYARAASWLERLELAELGGRRTGELSGGQAQRVAIARALVTG
PRVLFADEPTGALDSLTGELVMELLVGLAREEGTTVIVVTHDARVAACADREVVVRDGRVTDPYAGRVTDPYAGGVGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-26 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-27 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-27 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-27 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sros_4388 YP_003340008.1 lipoprotein transporter ATP-binding subunit NC_008702.1.4606598. Protein 3e-27 49
Sros_4388 YP_003340008.1 lipoprotein transporter ATP-binding subunit NC_012469.1.7686878. Protein 4e-32 43
Sros_4388 YP_003340008.1 lipoprotein transporter ATP-binding subunit CP001581.1.gene798.p Protein 1e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sros_4388 YP_003340008.1 lipoprotein transporter ATP-binding subunit VFG2059 Protein 4e-19 43