Gene Information

Name : Sros_3465 (Sros_3465)
Accession : YP_003339144.1
Strain : Streptosporangium roseum DSM 43021
Genome accession: NC_013595
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 3811238 - 3812071 bp
Length : 834 bp
Strand : -
Note : KEGG: rsk:RSKD131_3579 ABC transporter

DNA sequence : 
ATGTCGACCACCGACCCGGACCTGCGGGCGAGCGGACTGCACCTGGCGTACGACAACCGGCTGGTGGTGGAGGACCTCGA
CGTGGTCATCCCGCCGGGCCGCGTCACCGCCATCGTCGGCGCCAACGCCTGCGGCAAGTCCACCCTGCTGCGGGCTCTGG
CACGGCTGCTCGCGCCGCGCCGGGGCGCCGTCCAGCTCGACGGCCGGGCCCTGCACTCCATCCCCACCAGGGAGCTGGCC
CAGCGCCTGGGCATCCTGCCGCAGACGCCGGTCGCCCCGGAGGGGCTGACGGTCATCGACCTGGTCAACCGGGGCCGGTC
GCCGCACCAGACCTGGTGGCGGCAGTGGTCGAAGGCCGACGAGCAGGCCGTCCGCGGCGCACTGGCCGCCACCGGCATGA
CCGGCCTCGCCGACCGCGCGGTCGACGAGCTCTCCGGCGGCCAGCGCCAGCGTGCCTGGATCGCCATGGCCGTCGCCCAG
GGCACCCCGGTGCTGCTGCTGGACGAGCCGACGACCTACCTGGACCTGGCCCACCAGATCGACGTCCTGGACCTGATCAC
GGACCTCAACCGGCACGAGGGCCGCACGGTCGTGATGGTCCTGCACGACCTCAACCAGGCCTGCCGGTACGCCGACCACG
TCATCGCCATGAAGTCCGGCCGCATCGTCGCCGAGGGCGTCCCGTCCGACGTCATCACGGCCCGCACCGTGGAGGAGATC
TTCGATCTGCGCTGCCAGGTCACGACGGACCCGGTCAGCGGCACACCGCTGATCATCCCGATGAGCCGCCACCACGGCGC
CTCCGCCATCAGGGCGGTCGCCGAGACGGCCTGA

Protein sequence : 
MSTTDPDLRASGLHLAYDNRLVVEDLDVVIPPGRVTAIVGANACGKSTLLRALARLLAPRRGAVQLDGRALHSIPTRELA
QRLGILPQTPVAPEGLTVIDLVNRGRSPHQTWWRQWSKADEQAVRGALAATGMTGLADRAVDELSGGQRQRAWIAMAVAQ
GTPVLLLDEPTTYLDLAHQIDVLDLITDLNRHEGRTVVMVLHDLNQACRYADHVIAMKSGRIVAEGVPSDVITARTVEEI
FDLRCQVTTDPVSGTPLIIPMSRHHGASAIRAVAETA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 6e-60 53
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-50 50
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-50 50
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-50 50
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-50 50
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 6e-46 46
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 8e-56 46
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 8e-56 46
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 5e-44 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sros_3465 YP_003339144.1 ABC transporter BAC0164 Protein 4e-46 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sros_3465 YP_003339144.1 ABC transporter VFG0925 Protein 1e-60 53
Sros_3465 YP_003339144.1 ABC transporter VFG1042 Protein 3e-46 46