Gene Information

Name : Sros_3423 (Sros_3423)
Accession : YP_003339103.1
Strain : Streptosporangium roseum DSM 43021
Genome accession: NC_013595
Putative virulence/resistance : Virulence
Product : response regulator receiver protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3764419 - 3765093 bp
Length : 675 bp
Strand : -
Note : KEGG: pca:Pcar_3081 two component signal transduction response regulator

DNA sequence :
ATGCGGGTTCTCGTCGTGGAGGACGAGCGGCGGATGGCCGCGGCGCTACAGCGCGGGCTGCAGGCCGAGGGGTTCGCGGT
CGATCTCGCGCATGACGGCGAGGACGGTCTGCACCTGGCCAGGCAGGGCGACTACGACGTGGTCGTGCTGGACATCATGC
TGCCCAGGCTCTCCGGCTACAACGTCTGCAAGCAGTTGCGGGCCGAGGAGAACTGGGTGCCGATCCTGATGCTGTCGGCC
AAGGACGGCGAGTACGACATGGCCGACGGGCTCGATCTGGGCGCCGACGACTACCTGACCAAGCCGTTCTCCTACGTCGT
GCTGGTGGCCCGGCTGAGGGCGCTGCTGCGGCGCGGCGCCAACCGGCGCCCGTCCGTGCTGCGGGCCGGGGACCTGTCGC
TGGACCCCGCGCGCCGGCGGGTCTCCCGGGGCGAGACGCCGGTGGAGCTGACGCCCAGGGAGTTCGCGCTCCTGGAATAC
CTGATGCGCCGCCACGACGAGGTGGTCTCCAAGACGGAGATCCTGGAGCACGTCTGGGACACCTTCGACACCGACCCCAA
CGTGGTCGAGGTCTACGTCGGCTACCTGCGCCGCAAGATCGACGTGCCGTTCTCCAGGACCGCGTTGCAGACGGTGCGGG
GGGCCGGATACCGGCTGGCCGGCGATGGCGGCTGA

Protein sequence :
MRVLVVEDERRMAAALQRGLQAEGFAVDLAHDGEDGLHLARQGDYDVVVLDIMLPRLSGYNVCKQLRAEENWVPILMLSA
KDGEYDMADGLDLGADDYLTKPFSYVVLVARLRALLRRGANRRPSVLRAGDLSLDPARRRVSRGETPVELTPREFALLEY
LMRRHDEVVSKTEILEHVWDTFDTDPNVVEVYVGYLRRKIDVPFSRTALQTVRGAGYRLAGDGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 8e-30 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-29 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sros_3423 YP_003339103.1 response regulator receiver protein BAC0125 Protein 3e-38 51
Sros_3423 YP_003339103.1 response regulator receiver protein BAC0197 Protein 2e-31 47
Sros_3423 YP_003339103.1 response regulator receiver protein BAC0083 Protein 2e-32 46
Sros_3423 YP_003339103.1 response regulator receiver protein BAC0308 Protein 2e-30 46
Sros_3423 YP_003339103.1 response regulator receiver protein Y16952.3.orf35.gene. Protein 1e-21 45
Sros_3423 YP_003339103.1 response regulator receiver protein BAC0638 Protein 9e-23 45
Sros_3423 YP_003339103.1 response regulator receiver protein U82965.2.orf14.gene. Protein 5e-20 45
Sros_3423 YP_003339103.1 response regulator receiver protein BAC0111 Protein 7e-35 44
Sros_3423 YP_003339103.1 response regulator receiver protein NC_002516.2.879194.p Protein 1e-21 42
Sros_3423 YP_003339103.1 response regulator receiver protein BAC0347 Protein 2e-28 41
Sros_3423 YP_003339103.1 response regulator receiver protein AE000516.2.gene3505. Protein 5e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sros_3423 YP_003339103.1 response regulator receiver protein VFG1390 Protein 3e-35 47
Sros_3423 YP_003339103.1 response regulator receiver protein VFG1386 Protein 5e-26 43
Sros_3423 YP_003339103.1 response regulator receiver protein VFG0596 Protein 3e-30 42
Sros_3423 YP_003339103.1 response regulator receiver protein VFG1389 Protein 1e-24 42