Gene Information

Name : Dd586_0881 (Dd586_0881)
Accession : YP_003332472.1
Strain : Dickeya dadantii Ech586
Genome accession: NC_013592
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 977126 - 978385 bp
Length : 1260 bp
Strand : -
Note : PFAM: integrase family protein; KEGG: pct:PC1_0871 integrase family protein

DNA sequence :
ATGCCCCTGACTGATACCGCCATCCGCAACGCCAAACCGCTCGATAAACCTTACAAACTCAGTGACGCGCAAGGTCTATA
CCTGCTGATTAAACCTAACGGTTCCAAGCTCTGGCATCTTAAGTACCGCTTCGGCGGAAAGGAGAAGAAACTGGCGTTTG
GCGCTTACCCGACTGCCTCGCTGGCAACCGCCCGTAAACTGCGTGAGGAAGCCCGTGCGGTACTCTGCGCGGGTGCCGAT
CCCGGAGTAAAAAAACAGCAGGACAAGCAGGCGAGAAAAAACGGCAATACCTTTGAGACCGTCTCCCGTCAGTGGGTGGC
CGCGAACATTCGCTGGACTGAGGCACACGCCGCCAAAGTCCTTCGTTCACTGGAATTACACGTTTTCCCGCTGATCGGTA
AGACCCCCCTTACCGACCTGAAAACCGCCGACTTGCTGATCCCGCTGCGGGTAGCGGAGAAAAAGGGCTGTCTGGAAACG
GCTGCACGGATACAGCAACGCACGACGGTCATCATGCGTTACGCCGTACAGGAAGGACTGATTGCCAGCAATCCGGCCAA
TGACCTCTGCGGTGCTATCACCACACCGCCGAAAAACCATTACCCTGCCCTGCCGTTAGAAAGGTTGCCGGAACTGCTGG
AAAGAATCGAAGGCTATTCCGGCAGACTGCTGACAAGATTGGCGGTACAGCTTAATTTGCTGATCTTTATCCGTTCCAGC
GAATTACGTTTTGCCCGTTGGACGGAAATCGATCTGGATAACGCCATGTGGACACTTCCCGCACAGCGGGAGCCCATTAC
GGGTGTGCGTCACTCAGAGCGTGGTGCAAAAATGAAAACGCCGCATCTGGTGCCGCTGTCAAAACAGGCGGTAACGGTAC
TGAAGCAGCTAAAACTACTATCCGGCAACGGGGATTTGCTCTTTCCGGGCGATCACGATGCGCGTAAACCAATGAGTGAG
AACACTATCAACAAAGCGCTGCGAACGATGGGGTACGACACGCAGGCGGACATCTGCGGACATGGCTTCCGCACGATAGC
ATGTAGCGCGTTGATTGAATCAGGTCGATGGTCAAAAGATGCCGTGGAGCGGCAGATGAGCCATCAGGAGCGCAACCACG
TTCGCGCCGCCTATATTCACAAGGCGGAGCACCTCGACGAACGCACGCAGATGATGCAATGGTGGTCGGATTATCTTGAT
GCCTGCCAGCATCAGTTCATCCCGGCTTATCGCTTTGAGAAGTCGATTAAGGTTGCCTGA

Protein sequence :
MPLTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWHLKYRFGGKEKKLAFGAYPTASLATARKLREEARAVLCAGAD
PGVKKQQDKQARKNGNTFETVSRQWVAANIRWTEAHAAKVLRSLELHVFPLIGKTPLTDLKTADLLIPLRVAEKKGCLET
AARIQQRTTVIMRYAVQEGLIASNPANDLCGAITTPPKNHYPALPLERLPELLERIEGYSGRLLTRLAVQLNLLIFIRSS
ELRFARWTEIDLDNAMWTLPAQREPITGVRHSERGAKMKTPHLVPLSKQAVTVLKQLKLLSGNGDLLFPGDHDARKPMSE
NTINKALRTMGYDTQADICGHGFRTIACSALIESGRWSKDAVERQMSHQERNHVRAAYIHKAEHLDERTQMMQWWSDYLD
ACQHQFIPAYRFEKSIKVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-169 86
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-169 86
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 4e-121 61
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 2e-123 61
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 5e-122 61
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 4e-122 61
int AAL51028.1 CP4-like integrase Not tested LEE Protein 4e-122 61
int-phe AAL60261.1 Int-phe Not tested LEE Protein 4e-122 61
int AAK16198.1 Int Not tested PAI-I AL862 Protein 3e-123 61
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 3e-123 61
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 5e-122 61
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 1e-120 60
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-120 60
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 8e-121 60
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 3e-121 60
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 3e-121 60
int AAK00456.1 Int Not tested SHI-1 Protein 7e-113 60
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 8e-120 60
int AAL51003.1 CP4-like integrase Not tested LEE Protein 9e-122 60
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 8e-122 60
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 2e-121 60
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 3e-119 60
int CAC81896.1 integrase Not tested LEE II Protein 1e-113 60
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 5e-114 59
int CAA08754.1 integrase Not tested HPI Protein 6e-117 58
int CAB59974.1 integrase Not tested HPI Protein 9e-118 58
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 9e-81 57
int YP_002346908.1 integrase Not tested HPI Protein 2e-116 57
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 2e-116 57
int2 NP_993013.1 integrase Not tested HPI Protein 2e-116 57
int CAA21384.1 - Not tested HPI Protein 2e-116 57
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 2e-91 57
unnamed AAD17660.1 unknown Not tested HPI Protein 1e-112 56
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 6e-108 55
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 6e-108 55
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 2e-111 55
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 3e-95 53
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 7e-74 43
int AAD44730.1 Int Not tested SHI-2 Protein 1e-77 43
int CAC39282.1 integrase Not tested LPA Protein 2e-78 43
aec33 AAW51716.1 Int Not tested AGI-3 Protein 2e-78 43
int AAC31482.1 CP4-like integrase Not tested LEE Protein 9e-78 42
int ACU09430.1 integrase Not tested LEE Protein 9e-78 42
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 1e-77 42
ECs4534 NP_312561.1 integrase Not tested LEE Protein 1e-77 42
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 4e-76 42
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 5e-76 42
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 5e-76 42
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 3e-70 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dd586_0881 YP_003332472.1 integrase family protein VFG0626 Protein 1e-121 60
Dd586_0881 YP_003332472.1 integrase family protein VFG1693 Protein 3e-120 60
Dd586_0881 YP_003332472.1 integrase family protein VFG1536 Protein 3e-114 59
Dd586_0881 YP_003332472.1 integrase family protein VFG0783 Protein 5e-78 42
Dd586_0881 YP_003332472.1 integrase family protein VFG0598 Protein 2e-76 42