Gene Information

Name : Dd586_0409 (Dd586_0409)
Accession : YP_003332010.1
Strain : Dickeya dadantii Ech586
Genome accession: NC_013592
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 467318 - 467791 bp
Length : 474 bp
Strand : +
Note : TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: dze:Dd1591_0932 DNA repair protein RadC

DNA sequence : 
ATGAATCAACCGGTTTTACCGACCCCGTTTACCGAACATGAGCAGCGCATCATCCGCCGGGCCCAGCGCCTGCTGGAGCG
CCACCTGCGCCAGCCGGGTGAGCCGTTTACCGCCTCCTCCTATACCCGAATGTGGCTGCAACTGCATCTGGCCCCGCTGG
AGCGGGAGGTGTTCATGGTGCTGTTTCTCGATAACCAGCATCGCCTGATAGACCGGGAAATCATGGCGCTGGGCAGCATC
AACCATGTCGATATTCCCATCAGAGAAATCGTCAAAGCGGCCCTGCGCCACAACGCAGCGGCGGTGATCCTGGCGCACAA
CCACCCCTCCGGCCATGCCGAACCGAGCACGCCAGACCGGGCACTTACCGAGCGGCTGAAAAGCGCTCTTGAGCTGGTGG
ATATCCGCACGCTGGATCATCTGGTCATTGGCGGCAATCAGGTGGTGTCGTTCGCCGAACGCGGCTGGCTGTAA

Protein sequence : 
MNQPVLPTPFTEHEQRIIRRAQRLLERHLRQPGEPFTASSYTRMWLQLHLAPLEREVFMVLFLDNQHRLIDREIMALGSI
NHVDIPIREIVKAALRHNAAAVILAHNHPSGHAEPSTPDRALTERLKSALELVDIRTLDHLVIGGNQVVSFAERGWL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 3e-33 56
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 4e-34 56
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 1e-33 56
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 4e-34 56
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 4e-34 56
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 4e-34 56
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 4e-34 56
unnamed AAL08475.1 unknown Not tested SRL Protein 6e-34 56
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 9e-35 55
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 1e-32 55
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 6e-34 55
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 2e-33 55
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 7e-35 55
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 6e-35 55
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 9e-35 55
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 2e-34 55
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 4e-34 55
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 4e-34 55
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 5e-34 55
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 3e-27 53
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 3e-27 53
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-27 53
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 4e-25 49
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 9e-23 46
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 1e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dd586_0409 YP_003332010.1 DNA repair protein RadC VFG1528 Protein 2e-34 56
Dd586_0409 YP_003332010.1 DNA repair protein RadC VFG1066 Protein 2e-34 56
Dd586_0409 YP_003332010.1 DNA repair protein RadC VFG1678 Protein 2e-35 55
Dd586_0409 YP_003332010.1 DNA repair protein RadC VFG1617 Protein 7e-34 55
Dd586_0409 YP_003332010.1 DNA repair protein RadC VFG0660 Protein 1e-34 55
Dd586_0409 YP_003332010.1 DNA repair protein RadC VFG1119 Protein 7e-28 53