Gene Information

Name : Dd586_0407 (Dd586_0407)
Accession : YP_003332008.1
Strain : Dickeya dadantii Ech586
Genome accession: NC_013592
Putative virulence/resistance : Virulence
Product : GTP-binding protein HSR1-like protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG3596
EC number : -
Position : 465509 - 466375 bp
Length : 867 bp
Strand : +
Note : PFAM: GTP-binding protein HSR1-related; KEGG: dze:Dd1591_0930 GTP-binding protein HSR1-related

DNA sequence :
ATGAATCATCAGGATGGGCCTGCGCCGTTGCGTCAGGCGTTGTCGGGGTTGCCGGAGTGGGTGACAGCGCAAATCTGGCA
GCATATCCGGCAGTTGACCCACTACGAGCCGGTTATCGGCATCATGGGTAAGACCGGTGCGGGCAAGAGCAGCCTGTGTA
ATGCGCTGTTTGCCGGTGAGGTGTCGCCGGTCAGTGATGTGTCGGCCTGCACCCGTGAGCCGTTGCGCTTTCGCCTTAAC
GTGGGTGAGCGTTGCATGACGCTGGTAGACCTGCCCGGTGTCGGTGAAAGTGAACGGCGTGATATTGAGTATGCCGCGAT
GTATCGCCAGCAACTTCCGCATCTCGATCTGGTGCTGTGGCTGATCAAGGCCGATGACCGGGCGCTGGCGGTGGACGAGC
ACTTTTACCATCAGGTGATTGGTGAAGCCTGGCGGCACAAGGTGCTGTTTGTGGTCAGTCAGGCGGACAAGATTGAACCC
ACTGAGGGCGGCGTGAAGGCGTTGTCTGCCATACAGAGGCAGAGCCTTGAGCGCAAAATCGCCCTGCTGCACACCCTGTT
TTTGCCGGTGCACCCGGTCTGCGCGGTTTCGGTGCGGCTGCGCTGGGGGCTGTCGCGCATGGCGGCGCTGATGGTGGCAA
GCCTGCCGCGCCAAGCCAGCAGCCCGCTGGTCACACAGCTACAGCCGCCCCTTCGTAGCGAACACGTCACTCAAAAAGCC
CGCGATGATTTTGCCGATACGGTGGGCAGCACGCTCGATACCGTCAGCCGTCTGCCGCTGATACCGGCCACGGTGCGCAC
GCTTATCCAGACGCTGCGCGATACCGTGGTGTCCGTGGCCCGCGCTTTGTGGGCGGTGTTCTTCTGA

Protein sequence :
MNHQDGPAPLRQALSGLPEWVTAQIWQHIRQLTHYEPVIGIMGKTGAGKSSLCNALFAGEVSPVSDVSACTREPLRFRLN
VGERCMTLVDLPGVGESERRDIEYAAMYRQQLPHLDLVLWLIKADDRALAVDEHFYHQVIGEAWRHKVLFVVSQADKIEP
TEGGVKALSAIQRQSLERKIALLHTLFLPVHPVCAVSVRLRWGLSRMAALMVASLPRQASSPLVTQLQPPLRSEHVTQKA
RDDFADTVGSTLDTVSRLPLIPATVRTLIQTLRDTVVSVARALWAVFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sap NP_838477.1 hypothetical protein Not tested SHI-1 Protein 3e-62 52
unnamed AAL99256.1 unknown Not tested LEE Protein 2e-62 52
sap NP_708764.1 hypothetical protein Not tested SHI-1 Protein 9e-62 51
unnamed AAL08471.1 unknown Not tested SRL Protein 9e-63 51
ECO103_3582 YP_003223441.1 hypothetical protein Not tested LEE Protein 2e-62 51
unnamed AAK00473.1 unknown Not tested SHI-1 Protein 7e-62 51
Z1210 NP_286745.1 histone Not tested TAI Protein 9e-61 51
Z1650 NP_287153.1 hypothetical protein Not tested TAI Protein 9e-61 51
unnamed CAD66199.1 hypothetical protein Not tested PAI III 536 Protein 2e-62 51
APECO1_1093 YP_853113.1 hypothetical protein Not tested PAI IV APEC-O1 Protein 5e-61 51
aec64 AAW51747.1 Aec64 Not tested AGI-3 Protein 2e-62 51
yeeP ADD91709.1 YeeP Not tested PAI-I AL862 Protein 2e-62 51
yeeP CAE85196.1 YeeP protein Not tested PAI V 536 Protein 3e-62 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dd586_0407 YP_003332008.1 GTP-binding protein HSR1-like protein VFG1674 Protein 1e-62 51
Dd586_0407 YP_003332008.1 GTP-binding protein HSR1-like protein VFG0654 Protein 4e-62 51
Dd586_0407 YP_003332008.1 GTP-binding protein HSR1-like protein VFG1062 Protein 5e-63 51