Gene Information

Name : Dd586_2635 (Dd586_2635)
Accession : YP_003334184.1
Strain : Dickeya dadantii Ech586
Genome accession: NC_013592
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 2972189 - 2973460 bp
Length : 1272 bp
Strand : +
Note : PFAM: integrase family protein; KEGG: dze:Dd1591_1514 integrase family protein

DNA sequence :
ATGTCTCTTAACGACTCAAAAATCCGCAACTTAAAACCATCCGTTAAACCCTTCAAAGTTTCCGATTCTCATGGTCTGTA
TCTGCTGGTTAATCCAGGCGGTTCACGTCTCTGGTATCTCAAATATCGTATCAATAAAAAAGAATCCCGCCTCGGCTTAG
GTGCCTATCCTGATGTCTCTCTGGCTGATGCTCGTCAACAGCGTGACGGTATCCGTAAGCTACTGGTGCAGAATATCAAT
CCAGCACAACAGCGCTCCGCTGAAAGAGCCACTGCGTTGCCCGAAGAAACCTTCAAGTCTGTTGCACTGAGCTGGCATAA
AAGCAACAAAGCATGGTCTGAAAATCATGCCGTCCGTCTGCTCGCCAGCATGAATAACCATATTTTTCCGATCATTGGGC
ATCTACCTGTCTCTGAACTAAAACCACGTCATTTTATCGACCTGCTGAAAGGGATTGAGAAAAAAGGCCTGCTGGAAGTG
GCGGCACGTTCCCGGCAGCATATGTGCAACATCATGCGCCATGCCGTGCATCAGGAGTTGATAGATAACAATCCGGCGGC
AAATCTGGACGGTATCATCGCCCCTCCGGTTAAACGCCACTACCCAGCCCTTCCGCTGGAGCGACTATCGGAGCTGTTGA
CTCGTATCGGGGACTATAAGCAAGGACGAGAATTGACCCGCCTGGCAGTCTCACTCACCCTGCACCTGTTCATCCGTTCC
AGCGAACTGCGTTTTGCCCATTGGTCTGAGATCGATTTCAAAAACAATATCTGGACTATTCCTGCCAATCGCGAGGCTAT
CCCCGGTGTTCGCTATTCCGGGCGTGGCGCTAAAATGCGCACACCGCATATCGTTCCTCTCTCCAGTCAGTCCATCACTA
TTCTGAAACAGATACGGGAAATATCCGGGCATCAGGAGCTGGTATTTCCCGGTGATCATAATCCGTATAAGCCGATGTGC
GAAAACACGATCAACAAGGCACTGCGCCTGATGGGCTACGACACAAAAAGCGACATCTGCGGTCACGGATTCAGAGCAAT
GGCCTGCAGTGCGCTGATGGAATCTGGGCTGTGGGCGCAGGATGCGGTTGAACGGCAGATGAGTCATCAGGAACGCAATA
GCGTTCGAGCGGCTTATATCCATAAAGCAGAATATCTCGATGCCCGTAAAGCGATGATGCAATGGTGGTCGGATTATCTG
GATACCAACCGGGAAGAATATGTTGCGCCATACATTTATGCTCAACAACATGAAACGGCTGGAGCAGCCTGA

Protein sequence :
MSLNDSKIRNLKPSVKPFKVSDSHGLYLLVNPGGSRLWYLKYRINKKESRLGLGAYPDVSLADARQQRDGIRKLLVQNIN
PAQQRSAERATALPEETFKSVALSWHKSNKAWSENHAVRLLASMNNHIFPIIGHLPVSELKPRHFIDLLKGIEKKGLLEV
AARSRQHMCNIMRHAVHQELIDNNPAANLDGIIAPPVKRHYPALPLERLSELLTRIGDYKQGRELTRLAVSLTLHLFIRS
SELRFAHWSEIDFKNNIWTIPANREAIPGVRYSGRGAKMRTPHIVPLSSQSITILKQIREISGHQELVFPGDHNPYKPMC
ENTINKALRLMGYDTKSDICGHGFRAMACSALMESGLWAQDAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYL
DTNREEYVAPYIYAQQHETAGAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 4e-114 79
int CAB59974.1 integrase Not tested HPI Protein 2e-155 79
int YP_002346908.1 integrase Not tested HPI Protein 2e-154 79
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 2e-154 79
int2 NP_993013.1 integrase Not tested HPI Protein 2e-154 79
int CAA21384.1 - Not tested HPI Protein 2e-154 79
int CAA08754.1 integrase Not tested HPI Protein 4e-155 79
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 2e-128 78
unnamed AAD17660.1 unknown Not tested HPI Protein 2e-151 77
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-122 60
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-122 60
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 5e-125 58
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 5e-125 58
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 7e-110 55
int CAC81896.1 integrase Not tested LEE II Protein 5e-108 53
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-114 52
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 3e-114 52
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 3e-114 52
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 3e-114 52
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-114 52
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 4e-114 52
int AAK00456.1 Int Not tested SHI-1 Protein 6e-107 52
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 1e-115 52
int AAK16198.1 Int Not tested PAI-I AL862 Protein 9e-116 52
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 9e-116 52
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 6e-115 52
int AAL51003.1 CP4-like integrase Not tested LEE Protein 5e-115 52
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 1e-114 52
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 2e-115 52
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 9e-115 52
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 1e-113 52
int AAL51028.1 CP4-like integrase Not tested LEE Protein 2e-115 52
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 3e-115 52
int-phe AAL60261.1 Int-phe Not tested LEE Protein 2e-115 52
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 3e-115 52
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 8e-106 51
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 1e-100 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dd586_2635 YP_003334184.1 integrase family protein VFG1536 Protein 4e-110 55
Dd586_2635 YP_003334184.1 integrase family protein VFG0626 Protein 1e-114 52
Dd586_2635 YP_003334184.1 integrase family protein VFG1693 Protein 4e-115 52