Gene Information

Name : Dd586_2389 (Dd586_2389)
Accession : YP_003333945.1
Strain : Dickeya dadantii Ech586
Genome accession: NC_013592
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 2701909 - 2703159 bp
Length : 1251 bp
Strand : +
Note : PFAM: integrase family protein; KEGG: dda:Dd703_2362 integrase family protein

DNA sequence : 
ATGGCCCGTATAACTACCCCGCTGACCAATACCGAGATCAAAGCCGCCAAACCTGCCGAGAAGGAATACACGCTACAAGA
CGGGGATGGGTTGTATCTGTTGGTGAAACCGAGCGGTTCTAAAATCTGGCGCTTTAACTATTACCGCCCTGATACAAAGA
AACGAGCGTTAATCAGCTTTGGCGCATTCCCTGCGGTTTCTTTGGCTGAAGCCAGGCAACGGCGTGAATCAGCAAAAGCC
CTGATAAGCAAAGGCATCGATCCGCAATTCCACCAGCAACAGCAGCGCGAACAAGAACAAGCCATCAACCAGAACACGTT
CGCCAAAGTCGCCGCCGACTGGTACGAAGTGAAAAAATCTCAACCGCTGGCTGCAAACACGATTAAAGATATCTGGCGCT
CATTGGAAAAATACGTGTTCCCGTTCATCGCAAATCAGCCTATCAGCCAGCTTACCGCCCGCCATTTCATCACTGCGCTG
GAACCGATACAGGCCAGTGGCAAACTGGAAACCGTTAAACGGGTTAGCCAGCGTATTAACGAAGTGATGGACTATGCCGT
TAACTCCGGCCTGATACCGGCTAACCCGGCGGCGAAAATCCGCAAAGCATTTCAGACACCGGTGAAAACCCATATGCCGA
CCATCCGGCCAGAGGCATTGCCTGGCCTGATGAAAACACTATCGGTCGCCAGCATCGAGCTACAAACCCGGTTATTGATT
GAATGGCAATTGCTGACCGTTGCCCGCCCGGCTGAAGCCGCAGAAACCCGCTGGAGCGAGCTAGACCTTACGGAGAACAC
CTGGACAATCCCGGCTGGCCGCATGAAGATGCGCCGCGAGCACGTCATTCCCCTGCCCTCACAAGCGTTAGCCATTCTGG
ACGCCATGAAGCCAATCAGCGGGCACCGGGAATATCTGTTCCCTTCCGCTAAAGACCCGAAACAGCCGATGAACAGCCAA
ACCGCTAACGCCGCATTGCGTCGCATGGGTTACAAAGGCGTGCTGGTGTCCCACGGTTTGCGCGCTATCTTCAGTACCGC
CGCCAACGAAGCAGGCTTCCCGCCGGACGTCATCGAAGCCGCGCTAGCTCACGTTGACACCAATGAAGTGCGCCGCGCCT
ACAACCGTTCCACCTATCTGGAGCAACGCAAGGTACTGATGTGCTGGTGGGGTGAGTTTGTTGAAACCGCCGCCACCGGG
AAAGCGTTAGCATCCGACGGGGCACGAGGTTTGAGGGTGGTTGGAGAGTAG

Protein sequence : 
MARITTPLTNTEIKAAKPAEKEYTLQDGDGLYLLVKPSGSKIWRFNYYRPDTKKRALISFGAFPAVSLAEARQRRESAKA
LISKGIDPQFHQQQQREQEQAINQNTFAKVAADWYEVKKSQPLAANTIKDIWRSLEKYVFPFIANQPISQLTARHFITAL
EPIQASGKLETVKRVSQRINEVMDYAVNSGLIPANPAAKIRKAFQTPVKTHMPTIRPEALPGLMKTLSVASIELQTRLLI
EWQLLTVARPAEAAETRWSELDLTENTWTIPAGRMKMRREHVIPLPSQALAILDAMKPISGHREYLFPSAKDPKQPMNSQ
TANAALRRMGYKGVLVSHGLRAIFSTAANEAGFPPDVIEAALAHVDTNEVRRAYNRSTYLEQRKVLMCWWGEFVETAATG
KALASDGARGLRVVGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int AAK20803.1 integrase Not tested VPI Protein 1e-108 55
unnamed AAA82714.1 integrase Not tested VPI Protein 1e-108 55
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 1e-108 55
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 1e-108 55
int AAK20773.1 integrase Not tested VPI Protein 1e-108 55
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 1e-101 53
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 4e-95 50
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 4e-95 50
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 2e-95 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dd586_2389 YP_003333945.1 integrase family protein VFG1092 Protein 2e-95 50