Gene Information

Name : Dd586_2155 (Dd586_2155)
Accession : YP_003333714.1
Strain : Dickeya dadantii Ech586
Genome accession: NC_013592
Putative virulence/resistance : Unknown
Product : DNA topoisomerase III
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0550
EC number : -
Position : 2442877 - 2444799 bp
Length : 1923 bp
Strand : -
Note : KEGG: dze:Dd1591_2208 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein

DNA sequence :
ATGCGACTGTTTATTGCGGAAAAACCCAGTCTTGCCAGAGCGATTGCCGATGTCTTGCCTAAACCGCACCGGCGGGGCGA
TGGCTTCATTGCCTGTGGCGAACAGGATATGGTGACCTGGTGTGTGGGGCACCTGCTGGAACAGGCACAACCAGACGTTT
ACGATGCCCGCTACGCGCGCTGGTCGCTGGCTGACTTGCCGATCGTGCCACAAAAATGGCTGCTCCAGCCACGTCCATCG
GTAAGTAAGCAACTGAATGTGATCAAAAAACTGCTGACGCAGGCCGATGAAGTGATCCATGCCGGTGACCCGGACCGGGA
AGGGCAGTTGCTGGTCGATGAGGTGCTGGAGTATCTGGCGCTGCCTGAAGCGAAACGCCAGCAGGTACGTCGTTGTCTTA
TCAATGACCTGAACCCGCAAGCGGTGGAACGTGCAGTATCGCGCCTGCGTGAAAACCGGGAGTTTGTGCCGCTGTGTGTT
TCCGCACTGGCACGTTCACGTGCTGACTGGTTATATGGCATTAATATGACCCGCGCCTATACCCTGCTCGGGAAGAATGC
CGGGTATGAAGGCGTGTTGTCAGTCGGCCGGGTGCAGACGCCAGTATTGGGGCTGGTTGTCCGCCGTGATGAAGAGATAG
ACAATTTTGTGTCGCGCGACTATTTCGAGGTTAAGGCCCATATCGTTACCGCCAACGAGCGGTTTATCGCGTTGTGGCAG
CCAAGTGATTCGTGTGAGCCGTATCAGGACGAAGAAGGGCGTTTGCTGCATCGCCCGCTGGCTGAACACGTTGTTAAACG
CATCGAAGGGCAGCCCGCACAGGTCACGGCCTATAATGATAAACGGGAATCGGAAACCGCACCGTTGCCGTATTCCCTTT
CTACCTTGCAAATTGAAACGGCTAAACGCTTTGGTTTGAGCGCCCAACAAGTGCTGGATATTTGCCAGCGGTTGTATGAA
ACGCACAAGTTGATTACCTACCCGCGTTCGGATTGCCGGTATCTGCCGGAAGAACATTTCGCCGGGCGACACGCAGTACT
GAACGCGATTGCCGCACATCAGCCAGATTTATTGCCGCAGCCTGCGGCGGATCCTGAACGCCGCAATCGCTGCTGGGATG
ACAGTAAGGTTGACGCACACCATGCCATTATCCCCACCGCACGTAGCGCCCGCACATCGTTGACCGAGCAGGAAAGTCAG
GTTTATGGGTTGATTGCCCGGCAGTACCTGATGCAGTTTTGCGCTGATGCTGTCTTTCGTAAATGCGTTATTGAGCTGGA
TATCGCCGGTGGCAAGTTTGTGGCGAAGGCCCGTTTTCTGGCAGAGGCGGGGTGGCGCACGTTGCTCGGTCATAAAGAAC
GGGACGAGGAAAACGAGGGAATGCCGTTGCCGGTGGTGGCGAAAGGTGATGAGTTGTTGTGTGAGAGGGGGGAGGTGGTT
GAGCGACAAACTCAGCCTCCCCGGCCGTTTACCGATGCGACTTTGCTATCCGCCATGACTGGGATTGCCCGCTTCGTGCA
GGATAAGGCGCTGAAGAAGATCCTGCGTGAAACGGATGGTCTGGGTACCGAAGCCACGCGTGCAGGCATTATCGAACTGT
TGTTTAAACGCGCGTTCCTGATAAAGAAAGGGCGGCATATCCATGCGACTGACGCGGGTAAGGCGTTGATCCATGCGTTA
CCGCCGATCGCCGCGCACCCGGATATGACGGCACACTGGGAAGCCACGCTGACGCAAATTAGTGAAAAGCGTTGCCGCTA
CCAGGATTTTATGCAGCCACTGACGCAGTCGTTGTACGAACTTATTCAGCAGGCACGACAAAGTGGTAATATCTCGGCAT
TCAGAGGATTACCACCCGTTAAGCGCGCTTCGCCCGAGAAGCGCAAACGTCGTCAGTCACGTTCAGCCAGCACCAAGGAG
TAA

Protein sequence :
MRLFIAEKPSLARAIADVLPKPHRRGDGFIACGEQDMVTWCVGHLLEQAQPDVYDARYARWSLADLPIVPQKWLLQPRPS
VSKQLNVIKKLLTQADEVIHAGDPDREGQLLVDEVLEYLALPEAKRQQVRRCLINDLNPQAVERAVSRLRENREFVPLCV
SALARSRADWLYGINMTRAYTLLGKNAGYEGVLSVGRVQTPVLGLVVRRDEEIDNFVSRDYFEVKAHIVTANERFIALWQ
PSDSCEPYQDEEGRLLHRPLAEHVVKRIEGQPAQVTAYNDKRESETAPLPYSLSTLQIETAKRFGLSAQQVLDICQRLYE
THKLITYPRSDCRYLPEEHFAGRHAVLNAIAAHQPDLLPQPAADPERRNRCWDDSKVDAHHAIIPTARSARTSLTEQESQ
VYGLIARQYLMQFCADAVFRKCVIELDIAGGKFVAKARFLAEAGWRTLLGHKERDEENEGMPLPVVAKGDELLCERGEVV
ERQTQPPRPFTDATLLSAMTGIARFVQDKALKKILRETDGLGTEATRAGIIELLFKRAFLIKKGRHIHATDAGKALIHAL
PPIAAHPDMTAHWEATLTQISEKRCRYQDFMQPLTQSLYELIQQARQSGNISAFRGLPPVKRASPEKRKRRQSRSASTKE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
topB NP_458624.1 topoisomerase B Not tested SPI-7 Protein 4e-110 41
topB NP_807836.1 DNA topoisomerase III Not tested SPI-7 Protein 4e-110 41
topB AAF14809.1 topoisomerase B Not tested SPI-7 Protein 3e-110 41
topB AAN62317.1 putative DNA topoisomerase III Not tested PAGI-3(SG) Protein 1e-106 41
topB1 YP_005176228.1 DNA topoisomerase III Not tested ICEPmu1 Protein 4e-110 41