Gene Information

Name : Dd586_1890 (Dd586_1890)
Accession : YP_003333454.1
Strain : Dickeya dadantii Ech586
Genome accession: NC_013592
Putative virulence/resistance : Unknown
Product : ECF subfamily RNA polymerase sigma-24 subunit
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 2143010 - 2143564 bp
Length : 555 bp
Strand : +
Note : TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: dze:Dd1591_1893 RNA polymerase, sigma-24 subunit, ECF subfamily

DNA sequence : 
ATGGAAACTACTGCACTGAAACAATTGGATGTGTGTCAGGTTCATACCCCTGCCAATACCGTGGACTGGGAGCAGGTTTT
CCGCCTGCATGGCAAGCGACTGCAAAACTTCATTCGTAAGCGTGTATCGAACCGTGAGGATGTGGAAGATTTACAGCAGA
TGACCTATCTGGAAGTGTTGAAAAACCGTGAGAAATTCGCCGGTGCCTCACGTCCGGAGACCTGGGTTTTCGGCATCGCT
CTGAATCTGGTGCGCAACCATTTCAAGCAGGCGCGTTATCGCACCGTTGATATCAGCGACGAGGTGTTGGAGGTCGTGGA
AGTGATGTCAACGGATATCGATCCCAGCCGGATTACGGAGTGTGATCACGCGCTGGACCGCGCGCTGGCCGCCAGTGCGC
ACTTGCCGGAGGACACACGCAAGATGTTAGTGATGCTGCTGGATGCCGATATCAGCTATCAGGATATTGCCACTCAGCTC
AACATTCCTATTGGTACGGTTCGTTCGCGTCTTTCCCGCGCCAGAGGATATCTGCGCCAGGCCGTTGATGCATAA

Protein sequence : 
METTALKQLDVCQVHTPANTVDWEQVFRLHGKRLQNFIRKRVSNREDVEDLQQMTYLEVLKNREKFAGASRPETWVFGIA
LNLVRNHFKQARYRTVDISDEVLEVVEVMSTDIDPSRITECDHALDRALAASAHLPEDTRKMLVMLLDADISYQDIATQL
NIPIGTVRSRLSRARGYLRQAVDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpL AAD24681.1 sigma factor HrpL Virulence Hrp PAI Protein 2e-45 61
hrpL ABA47271.1 HrpL Virulence S-PAI Protein 5e-31 51
hrpL AAT96335.1 HrpL Virulence S-PAI Protein 4e-31 51
hrpL NP_791231.1 RNA polymerase sigma factor HrpL Virulence Hrp PAI Protein 6e-24 45
hrpL AAG33875.2 HrpL Virulence Hrp PAI Protein 3e-23 44
hrpL ABQ88350.1 HrpL Virulence Hrp PAI Protein 4e-23 43
hrpL AAA17652.1 putative alternate sigma factor Virulence Hrp PAI Protein 4e-23 43
hrpL AAT96137.1 HrpL Virulence T-PAI Protein 1e-23 43
hrpL AAT96191.1 HrpL Virulence T-PAI Protein 1e-23 43