Gene Information

Name : Dd586_1882 (Dd586_1882)
Accession : YP_003333446.1
Strain : Dickeya dadantii Ech586
Genome accession: NC_013592
Putative virulence/resistance : Virulence
Product : Yop virulence translocation R
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 2134217 - 2134870 bp
Length : 654 bp
Strand : -
Note : TIGRFAM: Yop virulence translocation R; PFAM: type III secretion system inner membrane P protein; KEGG: dze:Dd1591_1885 Yop virulence translocation R

DNA sequence : 
ATGACCTCAGGCAACTTCGATCCGGTGATGTTTGCCCTGTTTCTGGGGTCGCTGTCACTGATTCCACTGGCGATGATCGT
CTGCACCTGTTTTTTGAAAATATCGATGGTACTGATGCTCACCCGCAACGCCATCGGGGTACAGCAAGTGCCCCCCAACA
TGGCGTTATACGGTGTGGCGCTCGCCGCCACGCTGTTCGTGATGGCACCGGTATTCAGCGACATCAAACTGCGGTTTCAG
GACGCACCGGTGGATTTTAGCAGCCTTGATGCGCTGGAAAGCAGCGTGACCCGCGGCATCGAACCATTGCAGAAGTTCAT
GTCGCGCAACACCGACCCGGATATCCTCACTCATCTGCATGAAAACAGCCTGCGCATGTGGCCTGCTGCAATGACGGAGA
AAATAACTACCCAGAACATCCTGTTAATCCTGCCCGCTTACGTGCTCTCAGAGCTACAAGCCGGGTTTAAAATCGGTTTT
CTGATTTATATCCCGTTCATCGTTATCGACCTGATTGTCTCTAATGTCCTGCTGGCACTGGGGATGCAGATGGTCGCGCC
GACCACCCTTTCGCTCCCGCTCAAGCTACTGCTGTTCGTGCTGGTTAACGGCTGGACGCGTCTGCTGGACGGCCTGTTCT
ACAGTTACCTGTGA

Protein sequence : 
MTSGNFDPVMFALFLGSLSLIPLAMIVCTCFLKISMVLMLTRNAIGVQQVPPNMALYGVALAATLFVMAPVFSDIKLRFQ
DAPVDFSSLDALESSVTRGIEPLQKFMSRNTDPDILTHLHENSLRMWPAAMTEKITTQNILLILPAYVLSELQAGFKIGF
LIYIPFIVIDLIVSNVLLALGMQMVAPTTLSLPLKLLLFVLVNGWTRLLDGLFYSYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 6e-76 77
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 1e-64 72
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 1e-64 72
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-59 70
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-59 70
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-59 70
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 3e-63 70
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-66 69
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-66 69
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 1e-63 68
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 1e-60 67
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 6e-34 47
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-34 47
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-27 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-27 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-27 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 1e-27 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 2e-27 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 2e-27 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-27 42
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 3e-27 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-29 42
escR AAC31528.1 L0049 Virulence LEE Protein 1e-32 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-29 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-32 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 1e-32 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-32 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 7e-32 42
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 3e-26 41
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 3e-26 41
escR CAC81847.1 EscR protein Virulence LEE II Protein 1e-32 41
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 2e-32 41
escR CAI43889.1 EscR protein Virulence LEE Protein 1e-32 41
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 2e-32 41
escR AAC38369.1 EscR Virulence LEE Protein 1e-31 41
escR AAK26700.1 EscR Virulence LEE Protein 1e-32 41
escR AAL57527.1 EscR Virulence LEE Protein 1e-32 41
unnamed AAL06354.1 EscR Virulence LEE Protein 1e-31 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 3e-31 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 3e-31 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-31 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 8e-32 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dd586_1882 YP_003333446.1 Yop virulence translocation R VFG0044 Protein 8e-37 49
Dd586_1882 YP_003333446.1 Yop virulence translocation R VFG0188 Protein 2e-34 46
Dd586_1882 YP_003333446.1 Yop virulence translocation R VFG2338 Protein 9e-27 45
Dd586_1882 YP_003333446.1 Yop virulence translocation R VFG1773 Protein 7e-34 44
Dd586_1882 YP_003333446.1 Yop virulence translocation R VFG0394 Protein 3e-34 44
Dd586_1882 YP_003333446.1 Yop virulence translocation R VFG0827 Protein 6e-33 42
Dd586_1882 YP_003333446.1 Yop virulence translocation R VFG0551 Protein 1e-26 41
Dd586_1882 YP_003333446.1 Yop virulence translocation R VFG0715 Protein 5e-32 41
Dd586_1882 YP_003333446.1 Yop virulence translocation R VFG0519 Protein 4e-32 41