Gene Information

Name : Dd586_1528 (Dd586_1528)
Accession : YP_003333101.1
Strain : Dickeya dadantii Ech586
Genome accession: NC_013592
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1724107 - 1724883 bp
Length : 777 bp
Strand : -
Note : TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: dze:Dd1591_1566 flagellar biosynthetic protein FliP

DNA sequence :

ATGAGTACCCCCCAGCGTCCGATTTCACTTTCTACCTGGTTCCGCCTGCTTCGTTACCCTGCGGCCTCAATGTTATTGCT
GATTGCGCCTCACGCATTGGCACAGTTGCCCAGCATTATCAGCCACCCACTGCCTAATGGTGGGCAGAGCTGGTCCTTAC
CCGTTCAGACCCTGATCTTCATCACTGCGCTGAGCTTTATTCCAGCCGTGTTACTGATGATGACGTGCTTTACTCGTATC
ATCATCGTGCTGAGCTTGCTGCGTAACGCGTTAGGTACTCCTACGGCGCCGCCTAACCAGGTTCTGCTGGGTCTCAGTCT
GTTTCTGACTTTTTTTGTTATGTCTCCCGTACTGAACCGTATTTACGATGAGGCCTATCGCCCGTTCAGTGAAGACAAAA
TCAGCATGGAAGTCGCTATTGATAAAGGCTCGAAACCGCTGCGTGAGTTCATGCTGCGACAAACCCGGGAAGCGGATTTA
GCATTGTTTACCCGTTTGGCTCAGATTCCTTCGCTGCAGGGCCCGGAAGCTGTTCCAATGCGAGTGTTAGTGCCGGCTTA
TGTTACCAGCGAACTGAAAACCGCCTTTCAGATCGGTTTTACGATTTTCATTCCTTTTCTGCTGATTGACCTGGTTGTCG
CCAGCGTATTAATGGCACTGGGTATGATGATGGTCCCTCCAGCGACGATTTCGTTGCCGTTCAAACTGATGCTTTTCGTG
TTGGTTGACGGATGGCAATTACTGCTGGGGTCGCTGGCCCAGAGTTTCTATACTTAG

Protein sequence :

MSTPQRPISLSTWFRLLRYPAASMLLLIAPHALAQLPSIISHPLPNGGQSWSLPVQTLIFITALSFIPAVLLMMTCFTRI
IIVLSLLRNALGTPTAPPNQVLLGLSLFLTFFVMSPVLNRIYDEAYRPFSEDKISMEVAIDKGSKPLREFMLRQTREADL
ALFTRLAQIPSLQGPEAVPMRVLVPAYVTSELKTAFQIGFTIFIPFLLIDLVVASVLMALGMMMVPPATISLPFKLMLFV
LVDGWQLLLGSLAQSFYT

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
hrcR	ABA47279.1	HrcR	Virulence	S-PAI	Protein	2e-28	45
hrcR	AAT96146.1	HrcR	Virulence	T-PAI	Protein	1e-21	43
hrcR	AAT96200.1	HrcR	Virulence	T-PAI	Protein	1e-21	43
hrcR	AAT96262.1	HrcR	Virulence	S-PAI	Protein	1e-26	42
hrcR	AAT96303.1	HrcR	Virulence	S-PAI	Protein	1e-26	42
hrcR	AAT96343.1	HrcR	Virulence	S-PAI	Protein	1e-26	42
YPO0270	YP_002345352.1	type III secretion system protein	Virulence	Not named	Protein	2e-29	41
hrcR	AAB06005.2	HrcR	Virulence	Hrp PAI	Protein	3e-31	41
lscR	AAO18040.1	LscR	Virulence	TTSS locus	Protein	4e-28	41
escR	ACU09473.1	type III secretion system protein EscR	Virulence	LEE	Protein	5e-30	41
escR	AAK26700.1	EscR	Virulence	LEE	Protein	5e-30	41
escR	AAL57527.1	EscR	Virulence	LEE	Protein	5e-30	41
escR	CAC81847.1	EscR protein	Virulence	LEE II	Protein	5e-30	41
escR	CAI43889.1	EscR protein	Virulence	LEE	Protein	5e-30	41
escR	YP_003236103.1	T3SS structure protein EscR	Virulence	LEE	Protein	7e-30	41
escR	NP_290283.1	type III secretion system protein	Virulence	LEE	Protein	7e-30	41
escR	YP_003223490.1	T3SS structure protein EscR	Virulence	LEE	Protein	7e-30	41
escR	AAC31528.1	L0049	Virulence	LEE	Protein	5e-30	41
escR	YP_003232138.1	type III secretion system protein	Virulence	LEE	Protein	7e-30	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Dd586_1528	YP_003333101.1	flagellar biosynthetic protein FliP	VFG2338	Protein	7e-93	83
Dd586_1528	YP_003333101.1	flagellar biosynthetic protein FliP	VFG2494	Protein	3e-76	69
Dd586_1528	YP_003333101.1	flagellar biosynthetic protein FliP	VFG1259	Protein	4e-62	58
Dd586_1528	YP_003333101.1	flagellar biosynthetic protein FliP	VFG2016	Protein	3e-61	56
Dd586_1528	YP_003333101.1	flagellar biosynthetic protein FliP	VFG0188	Protein	1e-30	42
Dd586_1528	YP_003333101.1	flagellar biosynthetic protein FliP	VFG0044	Protein	1e-32	41
Dd586_1528	YP_003333101.1	flagellar biosynthetic protein FliP	VFG0394	Protein	4e-28	41
Dd586_1528	YP_003333101.1	flagellar biosynthetic protein FliP	VFG0827	Protein	3e-30	41