Gene Information

Name : Dd586_1478 (Dd586_1478)
Accession : YP_003333051.1
Strain : Dickeya dadantii Ech586
Genome accession: NC_013592
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1675312 - 1676595 bp
Length : 1284 bp
Strand : -
Note : PFAM: integrase family protein; KEGG: dze:Dd1591_1514 integrase family protein

DNA sequence :
ATGTCTATTAATGACTCAAAAATCCGCAACTTAAAACCATCTACAAAACCCTACAAAGTTTCCGATTCTCACGGCCTGTA
CCTGTTAATTAATCCCGGCGGTTCACGTCTCTGGTATCTCAAATATCGTATCAATAGAAAAGAATCCCGCCTCGGTTTAG
GTACCTACCCCGATGTATCGCTGGCTGATGCGCGTCAACAACGTGACAGCATCCGTAAACTGCTGGCGCAGAATATCAAC
CCCGCGCACCAACAGGCGGCAGAAAAAGCGCCCCGCTCACCAGAAAAATCATTCAGAGATGTAGCGCTGGACTGGCACAA
GAGCAACCGGACATGGTCAGAGAGCCACGCCACTCGCCTGCTTGCCAGTATGAACAACCATCTCTTTCCGGTTATCGGGC
ACCTGCCCGTTACGGAGCTGAAACCCCGTCACTTCATCAGTCTGCTGAGAGGGATTGAGAAAAAAGGTTTACTGGAAGTG
GCAGCCCGTACCCGGCAGCACCTGTGCAACATCATGCGTCATGCTGTGCATCAGGAACTGATAGAACACAATCCGGCGGC
CAATCTGGACGGTATTATCGCCTCACCAGTTAAACGTCACTACCCTGCCCTGCCGCTGGAGCAACTACCGGAACTGTTGA
CGCGCATTGAGGACTACCGGCAAGGACGGGAATTAACCCGGCTGGCCGTATCGCTCACCCTGCATCTGTTCATCCGCTCC
AGCGAATTGCGCTTCGCTCGCTGGTCGGAAATTGATTTCAGAAACCACATCTGGACTATTCCCGCTACCCGCAAAGCCAT
CCCCGGCGTGCGTTATTCCGGGCGTGGCGCGAAGATGCGTACCCCACATATCGTTCCCCTCTCCCGGCAGGCCATCGCTA
TTCTGAGACAGATACAGGAAATCTCCGGACATCAGGTGCTGATATTTCCCGGCGCTCACAATCCGTATAAACCGATGTGC
GAAAACACGGTCAACAAGGCACTGCGACTGATGGGTTATGACACGAAAGACGAAATCTGCGGTCATGGATTCCGGGCAAT
GGCCTGCAGCGCGCTGATGGAATCCAGCCTGTGGGCGCAGGATGCGGTTGAACGGCAGATGAGCCATCAGGAACGCAACA
GCGTGCGAGCGGCGTACATCCATAAAGCGGAATATCTCGATGCCCGAAAAGCGATGATGCAATGGTGGTCGGATTATCTG
GATATGAACCGGGAAAATTACGTTGCGCCCTATGTTTATGCGCAAGTGACGCTGCTCCCCTCAAGAGCAGTAAAAACGCA
ATGA

Protein sequence :
MSINDSKIRNLKPSTKPYKVSDSHGLYLLINPGGSRLWYLKYRINRKESRLGLGTYPDVSLADARQQRDSIRKLLAQNIN
PAHQQAAEKAPRSPEKSFRDVALDWHKSNRTWSESHATRLLASMNNHLFPVIGHLPVTELKPRHFISLLRGIEKKGLLEV
AARTRQHLCNIMRHAVHQELIEHNPAANLDGIIASPVKRHYPALPLEQLPELLTRIEDYRQGRELTRLAVSLTLHLFIRS
SELRFARWSEIDFRNHIWTIPATRKAIPGVRYSGRGAKMRTPHIVPLSRQAIAILRQIQEISGHQVLIFPGAHNPYKPMC
ENTVNKALRLMGYDTKDEICGHGFRAMACSALMESSLWAQDAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYL
DMNRENYVAPYVYAQVTLLPSRAVKTQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 2e-118 77
int CAA08754.1 integrase Not tested HPI Protein 1e-159 76
int CAB59974.1 integrase Not tested HPI Protein 4e-160 76
int YP_002346908.1 integrase Not tested HPI Protein 6e-159 76
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 6e-159 76
int2 NP_993013.1 integrase Not tested HPI Protein 6e-159 76
int CAA21384.1 - Not tested HPI Protein 6e-159 76
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 3e-128 76
unnamed AAD17660.1 unknown Not tested HPI Protein 2e-155 74
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 1e-117 59
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 1e-117 59
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 2e-121 57
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 2e-121 57
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 2e-109 56
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 5e-113 55
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 1e-112 54
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 4e-112 54
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 2e-112 54
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 2e-112 54
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 5e-112 54
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 7e-112 54
int AAK00456.1 Int Not tested SHI-1 Protein 5e-105 54
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 2e-113 54
int AAK16198.1 Int Not tested PAI-I AL862 Protein 1e-113 54
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 1e-113 54
int CAC81896.1 integrase Not tested LEE II Protein 3e-105 54
int AAL51003.1 CP4-like integrase Not tested LEE Protein 1e-113 54
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 8e-114 54
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 3e-111 54
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 4e-112 53
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 7e-113 53
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 5e-113 53
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 7e-113 53
int AAL51028.1 CP4-like integrase Not tested LEE Protein 5e-113 53
int-phe AAL60261.1 Int-phe Not tested LEE Protein 5e-113 53
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 7e-102 50
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 1e-96 49
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 3e-67 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dd586_1478 YP_003333051.1 integrase family protein VFG1536 Protein 1e-109 56
Dd586_1478 YP_003333051.1 integrase family protein VFG1693 Protein 2e-113 55
Dd586_1478 YP_003333051.1 integrase family protein VFG0626 Protein 7e-113 54