Gene Information

Name : Dd586_1297 (Dd586_1297)
Accession : YP_003332884.1
Strain : Dickeya dadantii Ech586
Genome accession: NC_013592
Putative virulence/resistance : Virulence
Product : type VI secretion protein, VC_A0114 family
Function : -
COG functional category : S : Function unknown
COG ID : COG3522
EC number : -
Position : 1445470 - 1446807 bp
Length : 1338 bp
Strand : +
Note : TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: dze:Dd1591_2800 type VI secretion protein, VC_A0114 family

DNA sequence :
ATGTCGAGCCGAAATCGGATTATTTGGCGGGAAGGGCTGTTCATCAAGCCGCAGCATTTCCAGCAACAGCAACGACACAC
CGACTACGCGCTGCACGCCCGTCTTAGCGCGCTCAGTGATTATTTCTACGGCCTGCAATCGCTGGCTATTAACGAAGAAT
ACCTTAACTTCGGGCGTATCGCGCTGGTGAACGCCACCGGCGTGATGCCGGATGGCACGGTCTTCAATATCCCAGGGGAT
GACGCGCTGCCGCAACCGCTGGAGATTACCGATGTGGCGCTGGCGAACCAAAAGGTCTATCTGGCGCTGCCGTTGGCGGT
GAACGGTGTGAGCGAAGTCGGGCAGGCCGGTGCCGGTATTGCCACCCGGTTGCAGTCGCACCGGCATGATGTGCGTGACT
TGCACAGCGAAGGTGGTGACGTGGTATCGGTGGAAGTGGGCAAGGTCAGTCTGCGGCTGATGCTGGAGCGTGATGACCGT
AGTGCCTACGCGTCGCTGGCGATCGCCAACATCCTCGACAAACGGCCGGACGGTGGGCTGGTTCTTGACCCTAACTTTAT
GCCGTGCAGCATCAGCGTCACGGCGATTCCGAGCCTGAAACGCTTTCTGGGGGAATCGGCCGGTCTGGTGGCAGAACGCG
CCCGCAGTCTGGCTCAGCGTATCGCCGCGCCCGGTCAGCAAGGGGTGGCGGATGTGGCGGAATTCATGATGCTGCAACTG
CTTAACCGCGCCCAGCCGCAACTGTCGCATCTGGCGCGCCTCGGCACGTTACACCCGGAGCGGCTGCATGAAGCGCTGGT
GCAACTGTGCGGTGAGCTGATGACCTTTACCGATGAATCGCGCCTGCCGCCGGAGTTTCCCGCTTATCGTCATGAGCATC
AGCAATCGAGCTTTGAGCCGCTGATGATGGCGCTACGTCAGGCGTTGAGTACCGTGCTGTCGCCACGTGCGGTGTCGATT
CAGATGAAGGCACAGCCTTACGGCGTCAGGGTGGCGCTGGTGGGCGATGCCGAACTGATGGCCAGTGCCGAATTTGTGCT
GGCGGTGCGCGCCCGTATGCCGCAAGAACATTTGCGCAAGCAACTGCTGCAACAAACCAAGATCGCCTCCAGCGACAAAA
TCCGCGAGCTCATCAGTCTGCAACTGCCTGGCGTACCGTTGCTGCCGCTACCGGTGGCACCGCGTCAGTTGCCGTACCAC
GCCGGTTACAGCTACTTCCAGTTGGACAGGCAAAGCCCGGCCTGGAAATCGCTGGTCACCAGCAACACGCTGGCGTTCCA
CATCGCTGGCGAGTTCCCGGAACTGGATATGCAACTGTGGGCCATCCGCGGCCAGTAG

Protein sequence :
MSSRNRIIWREGLFIKPQHFQQQQRHTDYALHARLSALSDYFYGLQSLAINEEYLNFGRIALVNATGVMPDGTVFNIPGD
DALPQPLEITDVALANQKVYLALPLAVNGVSEVGQAGAGIATRLQSHRHDVRDLHSEGGDVVSVEVGKVSLRLMLERDDR
SAYASLAIANILDKRPDGGLVLDPNFMPCSISVTAIPSLKRFLGESAGLVAERARSLAQRIAAPGQQGVADVAEFMMLQL
LNRAQPQLSHLARLGTLHPERLHEALVQLCGELMTFTDESRLPPEFPAYRHEHQQSSFEPLMMALRQALSTVLSPRAVSI
QMKAQPYGVRVALVGDAELMASAEFVLAVRARMPQEHLRKQLLQQTKIASSDKIRELISLQLPGVPLLPLPVAPRQLPYH
AGYSYFQLDRQSPAWKSLVTSNTLAFHIAGEFPELDMQLWAIRGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec25 YP_851420.1 hypothetical protein Not tested PAI II APEC-O1 Protein 1e-85 47
aec25 AAQ96719.1 Aec25 Not tested AGI-1 Protein 9e-86 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dd586_1297 YP_003332884.1 type VI secretion protein, VC_A0114 family VFG2082 Protein 2e-124 60
Dd586_1297 YP_003332884.1 type VI secretion protein, VC_A0114 family VFG2065 Protein 3e-87 44