Gene Information

Name : Dd586_1293 (Dd586_1293)
Accession : YP_003332880.1
Strain : Dickeya dadantii Ech586
Genome accession: NC_013592
Putative virulence/resistance : Virulence
Product : type VI secretion protein, VC_A0110 family
Function : -
COG functional category : S : Function unknown
COG ID : COG3519
EC number : -
Position : 1440971 - 1442737 bp
Length : 1767 bp
Strand : +
Note : TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: dze:Dd1591_2804 type VI secretion protein, VC_A0110 family

DNA sequence :
ATGTCGCTGGAACATTTCTTCAGGGATGAACTCGCTTATTTGCGTCTGCAAGGACGTGAATTTGCCAATGCACACCCTGA
ACTTACCCGATTTTTGTCAGAACAGACCACGGATCCGGATGTCGAGCGATTGCTGGAAGGGTTCGCCTTTCTGACGGGTA
GCCTGCGGGCGAAGATCGAGGATGAATTTCCGGAGCTGACTCACGGCCTGCTGGGCATGCTGTGGCCGAACTATTTGCGC
CCGGTACCCAGCATGACCATCATGCAATTTTCGGTGCTGCCCGGTGCTATCGCGCAACCGGCGTTTGTAGCGCGTGGCTG
CGAGCTGGACAGCCTGCCAATAGACGATGTGGTCTGCCATTTCCAAACCTGCCACGACGCCTGGATCTACCCGGCGGATA
TCCGCCAGATCAACGCGCAAAGCGGCAACGACATGTCCGCCATCACGCTGGATATTGGTCTGCACGGGCCGGTGGCGCTG
GGGGATTTGCAGCTGGATAAACTGCGCTTCTTCCTGGGTGGCGACCGCTATACTGCCTACGAACTCTATTTCTGGATAGC
CAGCCAGCTGTCACACATTGAGCTGGAAGTGGACGGGAAACGCTTTCGTCAGGAGGCGAGTGTACTCAAAACCGTCGGCT
TTGAGCGTGAAGACGCGATGCTGCCGTATCCCGGTAATGTGTATTCCGGCTACCGTATCCTTCAGGAGTATTTCTGTTTT
CCGGAAAGTTTCCTGTTCTTTCAGTTGTCCGGTGCCAGTTGGCCTGATCAGCCGCTGATGGTGACGGATTTCAAACTGCA
TTTCTGCTTTGACCGGCCGCTGCCGGCGGAACTGAAAATCCGCCCGGATTCGTTCATGCTCAATTGTGTACCGGCTATCA
ACCTGTTCCGCCATGACAGCGAACCGATCAACCTGGATGGTCGCCAGACGGACTACCCGTTGAAAGCCAGCTACCGCCAC
GCCGACAGCTTCGAGATTTTCTCCATCGATAAAGTGGAGGGGTGGGTGGAAGGTAACAGTGGACGCGCGCGCGGTATCCC
ACGGCTTTACCAACCTTTCGAGAGTTTTCAGCACCAAATCGAGCGGGCCAAAGGTCGACTGGCGCTGTATTACCGCATTC
GGGTGCGCGAAGCCGTCAATGGTGATGGTTTCGATCACTTATTGTCGTTCGTGCGGGGCGACGAAAAAGAAGTCATCGAC
CTGGACGAGTCCATTTCGGTGAGCCTGACCTGCACCAACCGTTCGCGGGCGGCGCAGTTGCCTGTGGGGGCGATTTGCGT
GCCGACCGGCAGTTCACCGTCCTTTGCCACCTTCCGTAACCTGATTCGGCCGACCCGTCCATTGCGCCCGGCACTCGATG
GCAGCCTGCACTGGACGCTTATCTCCAACCTGTCATTGAACTATGTGTCGCTGCTGCGACGCGATGCGCTGGTGCAGATC
CTGCGTACTTACGACTTCCCGGCACTGCATGACAAGCAGGCCGAGCAGGCATCGCGTAAACGGCTGGCGGGGATAGAAAC
GATCGAGACCACACCGGTAGACCGGCTGGTACAGGGGATGCCGGTACGCGGGCTCAAGTCAGTTCTCTCCGTGCGGCAGT
CGGCGTTCGCCAGTGAAGGCGAGCTCTATCTGTTCAGCACTGTGCTGGCGCATTTCTTCTCGTTGTATGCCAGCGTTAAC
GCCTTCCACCTGCTGGAAGTGGTCAACATCGATAACAAGGAGCGCTACCGATGGCCGGTGCAGATAGGTCAGCACTCGAT
GATGTGA

Protein sequence :
MSLEHFFRDELAYLRLQGREFANAHPELTRFLSEQTTDPDVERLLEGFAFLTGSLRAKIEDEFPELTHGLLGMLWPNYLR
PVPSMTIMQFSVLPGAIAQPAFVARGCELDSLPIDDVVCHFQTCHDAWIYPADIRQINAQSGNDMSAITLDIGLHGPVAL
GDLQLDKLRFFLGGDRYTAYELYFWIASQLSHIELEVDGKRFRQEASVLKTVGFEREDAMLPYPGNVYSGYRILQEYFCF
PESFLFFQLSGASWPDQPLMVTDFKLHFCFDRPLPAELKIRPDSFMLNCVPAINLFRHDSEPINLDGRQTDYPLKASYRH
ADSFEIFSIDKVEGWVEGNSGRARGIPRLYQPFESFQHQIERAKGRLALYYRIRVREAVNGDGFDHLLSFVRGDEKEVID
LDESISVSLTCTNRSRAAQLPVGAICVPTGSSPSFATFRNLIRPTRPLRPALDGSLHWTLISNLSLNYVSLLRRDALVQI
LRTYDFPALHDKQAEQASRKRLAGIETIETTPVDRLVQGMPVRGLKSVLSVRQSAFASEGELYLFSTVLAHFFSLYASVN
AFHLLEVVNIDNKERYRWPVQIGQHSMM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
APECO1_1761 YP_851424.1 hypothetical protein Not tested PAI II APEC-O1 Protein 6e-129 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dd586_1293 YP_003332880.1 type VI secretion protein, VC_A0110 family VFG2078 Protein 4e-160 52