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Name : clpC (DhcVS_56) Accession : YP_003329558.1 Strain : Dehalococcoides sp. VS Genome accession: NC_013552 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 50378 - 52852 bp Length : 2475 bp Strand : + Note : - DNA sequence : ATGTCTAGTAGATTTGATAAATTTTCTGAAAGAGCGCGCCGGGTTCTTACCTATGCACAGGAAGAGGCCCAGAACCTTAA CCATAACTATATCGGTACCGAGCATATTCTGCTGGGGCTGGTAAGGGAAGAAGAAGGCGTGGCTGCTCGAGTACTGGTCA ACATGGAAGTAAATTTGGCCAAAGTACGTTCTGCCGTTGAATTTATACTTGGGCGGGGCGAACACCCGGCTACCTCTGAA ACCGGTCTTACCTCCAGAGCCAAAAAGGTAATAGAACTGGGTATTGATGAAGCCAGAAACTTGGGGCACAACTATATCGG CACTGAGCACCTGCTTTTAGGTTTACTGCGCGAAGGTGAAGGAGCAGCAGCCGGTGTGCTTGAGAGTTTCGGGGTTACTG TTGAAAAGGTACGCACCGAAGTGGGGCGTATTTTAAATCAGGGCTTAAATAAACCTAAAACCAGCCGTACAACTCCCAGC CGGACCCCCCAGCTTGACCAGCTGGGCTTTGACCTTACGGCTGCTGCCAGAACCGGCAAGCTTGACCCGGTTATCGGTCG TGCCAAAGAAATAGAGCGGGTCGTTCAGATTCTTTCCCGCCGCACTAAAAATAACCCTGCCCTTATCGGCGAACCCGGTG TCGGCAAAACCTCCATTGTAGAGGGGCTGGCCCAGCGGATTGTTTCGGGTGATGTTCCGGAAACTTTGGAGCAGAAACAT ATAATCTCGCTGGACGTGGCCTCACTGGTAGCCGGTACTAAATACCGGGGTGAATTTGAGGAACGGCTCAAGAAAGTTAT TGAAGAAATTAAAAACGCAGGCAATATAATCCTGTTTATAGACGAATTTCATACCATGGTGGGTGCCGGTGCCGCCGAGG GTGCGGTAGATGCCGCTAATATCCTCAAGCCTTCGCTGGCCAGAGGCGAGGTACAGGTAATAGGGGCAACTACCCTGGAT GACTTTCGCAAATATGTTGAGCGGGATGCCGCACTTGAGCGGCGTTTCCAGCCGGTGCTGGTGGAAGAACCGGCCATAGA AGATACCCTGAATATTCTTCGCGGCATAAAAGAGCGCTACGAAGAGCATCATAAGCTTATCATCAGCGAAGAAGCTATTG CCGCTGCCGCCAATATGGCTGCCAGATATATACCTGACCGCTTTTTGCCGGACAAGGCTATAGATTTAGTTGATGAGGCC GCTTCACGGGTGCGGATAAAGAAACGCACCAAGCCGGTCTCTTTGAAAGAGATGAAAGCCATAGAAGACAGCTACCGCCG GGATAAAGAAGCCGCTTTGGCAACCCAGCAGTATGACTATGCTTCCGAATTGCGTGAGCGTGAGCTTCAGATAGCTGAAA AGATACGCCGCATGGAAGACGAATGGCAGAACGAACAGGCTATGGACAAGCCGGTAGTGGGCGAAGAAGATATTGCCCAG GTAGTCAGCATGTGGACGGGTGTGCCGCTGGTACAGCTTACCGGTGACGAAACCGAACGTCTTTTACATATGGAAGAAGC CCTGCATGAGCGGATTATCGGCCAGGAAGAAGCTATTGTTACCATATCCAAGGCTGTCAGACGGGCACGGGCCGGTCTTA AAGACCCCCGCCACCCCATCGGCAATTTTGTTTTCCTCGGGCCTACCGGCGTGGGTAAAACCGAGCTGGCACGGGCGCTT GCCCAGTTTATGTTTGGTTCGGAAGATGCTTTGGTTCGGCTGGATATGTCCGAATTTATGGAAAAATTTGCCGTATCCCG TCTGGTGGGTGCGCCTCCCGGATATGTGGGTTATGATGAGGGCGGTCAGCTGACTGAAGCCGTTCGCCGCAAGTCGTACT GCCTGATACTGTTGGACGAAATAGAAAAAGCTCATCCTGATGTTTTCAACATACTTCTGCAGATATTTGATGACGGCCAC CTGACAGATGCCAAGGGCAGAAGGGTGGATTTCAGGAATACCATTATTATCATGACCTCAAACATTGGGGCTGAGCTTAT CCGCAAGGGCAGCGGGACTATCGGTTTTGCTACCCAGACAGATGAATCAAAGGCTCAGCAAACTAACTTTGAGCATATGA AAGACAAGCTGCTGGGTGAGCTCAAGAAGAGTTTCCGTCCGGAATTCTTGAACCGCATTGACAGCGTGGTGGTTTTCCAC TCGCTGAACAAAGAGCAGATTCGCAGCATTGTTGACCTGATGCTTAAGAGTGTTATCAAGCAGATGTCTGAAAAGGGTAT CGGGCTTGAAGTGACTGAATCTGCCAAAGACCTGCTGGGCAAGAAAGGTTATGATGAGGTTTATGGTGCAAGGCCGCTGC GCCGCACTATACAGACCATGATAGAAGATCGTCTGTCCGAGGACCTTCTGCGGGCTAAATTTAAAGCTGGGGATAAAGTG ATAGTGGATATTGCTGAAGATGAAATAATTGTCCGTCTGGCAGAGCCGGCTGAGCTTAGTCAGGCTACTTCGTAA Protein sequence : MSSRFDKFSERARRVLTYAQEEAQNLNHNYIGTEHILLGLVREEEGVAARVLVNMEVNLAKVRSAVEFILGRGEHPATSE TGLTSRAKKVIELGIDEARNLGHNYIGTEHLLLGLLREGEGAAAGVLESFGVTVEKVRTEVGRILNQGLNKPKTSRTTPS RTPQLDQLGFDLTAAARTGKLDPVIGRAKEIERVVQILSRRTKNNPALIGEPGVGKTSIVEGLAQRIVSGDVPETLEQKH IISLDVASLVAGTKYRGEFEERLKKVIEEIKNAGNIILFIDEFHTMVGAGAAEGAVDAANILKPSLARGEVQVIGATTLD DFRKYVERDAALERRFQPVLVEEPAIEDTLNILRGIKERYEEHHKLIISEEAIAAAANMAARYIPDRFLPDKAIDLVDEA ASRVRIKKRTKPVSLKEMKAIEDSYRRDKEAALATQQYDYASELRERELQIAEKIRRMEDEWQNEQAMDKPVVGEEDIAQ VVSMWTGVPLVQLTGDETERLLHMEEALHERIIGQEEAIVTISKAVRRARAGLKDPRHPIGNFVFLGPTGVGKTELARAL AQFMFGSEDALVRLDMSEFMEKFAVSRLVGAPPGYVGYDEGGQLTEAVRRKSYCLILLDEIEKAHPDVFNILLQIFDDGH LTDAKGRRVDFRNTIIIMTSNIGAELIRKGSGTIGFATQTDESKAQQTNFEHMKDKLLGELKKSFRPEFLNRIDSVVVFH SLNKEQIRSIVDLMLKSVIKQMSEKGIGLEVTESAKDLLGKKGYDEVYGARPLRRTIQTMIEDRLSEDLLRAKFKAGDKV IVDIAEDEIIVRLAEPAELSQATS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 56 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_003329558.1 | ATP-dependent Clp protease ATP-binding subunit | VFG0079 | Protein | 0.0 | 57 |
| clpC | YP_003329558.1 | ATP-dependent Clp protease ATP-binding subunit | VFG0080 | Protein | 7e-148 | 51 |
