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Name : clp (DhcVS_1194) Accession : YP_003330634.1 Strain : Dehalococcoides sp. VS Genome accession: NC_013552 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1105190 - 1107628 bp Length : 2439 bp Strand : + Note : - DNA sequence : GTGAGACAGGAGAAATTTACCGAACAAGCCCAGGAAGCACTCAGCGCTTCACAGTTGCTGGTGCAAGAATATCAGCACAG CCAATGGGATGTGGAACATGTGCTGCTGGCCCTTATCCGTCAGGAAAAAGGACTGGTGGGTGAAATAATAAAAGAACTCA AAGTAAGCTCAGAGGAGATAACCAAGCAGCTGGCAGAAGCTTTAAAACGTTCGCCCAAAGCAGTAGGCGGCAACATCCAG ATATACCCCACCCCCCGCATTATCAGCCTGCTGCAAACCGCCAATAACGAAGCAGACCGCCTGCGGGACGAATTTATAGG GACAGAACACTTGCTGGTAGCTATAGCAGGAGATACCCAGGGAGAATCCGCCCGAATTTTGAAGCAGTTTGGTATTGACC AGGAAAAAGTATATTCCGCTCTCCAAAAAATACGGGGCGGACACCGGGTGACCGATGCCAGAGCTGAAAGCAAATACAGG GCACTGGCTAAATACAGCCGTGATTTAACTGAACTTGCCAAACAGAACAAAATAGACCCGGTAATAGGCCGCGACCAGGA AATCCGCCGGGTTATGCAGATACTCTCCCGCCGCACCAAAAACAACCCGGTCATTGTGGGGGAAGCTGGTGTTGGTAAAA CCGCCATTGCCGAAGGGGTTGCCCAGAAAATTGCGGATAATGACGTACCCGAATCCTTGCGTGACCGCAAGGTAATGGCC CTGGACATGGGCGCTTTGGTTGCCGGAAGCAAGTTCCGCGGGGAGTTTGAAGAACGCCTCAAGGCCGTGATGGACGAGGT GCGGCAATCCGCCGGTGAAATTATTCTTTTCATAGACGAAATCCATACCGTAGTCGGGGCAGGAGCGGCTGAGGGGGCTA TAGATGCCTCAAACATGCTCAAACCGGCATTATCCAGGGGTGAACTCCAGACAATAGGGGCTACCACTCTGGATGATTAC CGCAAATATATAGAGAAAGACACTGCTCTGGAACGCCGTTTCCAGCCGGTATTTGTAGAAGAACCCTCAGTCGACCAAAC TATCGAGATATTAAAGGGTATCAGACCCAAGTACGAAGCCCACCACAAGCTGAAGATAAGCGATGCCGCACTGGAAGCAG CCGTCAGGCTGTCCAGCCGCTATATTACGGAGCGCCAGCTGCCTGACAAGGCCATAGACCTTATTGACGAAGCCGCAAGC AAACTCCGTCTGGATAGCGAAAGTGCCCCGCCGGAAGTAAAGAAACTGGAAAATGAACTCCGCCAGACAGGCATTGAGGA AGAAGCAGCTTCTCAGTTGCAGGAATACGAAAAAGCGGCCGAACTCAAAGCCGAAAAGATGCGTCTGGAAGAGAAATTCA ATACAGCCCGTGAGGAATGGCTGAAACAGGAAAAAATTGCCGAAGAAGTCACTGCCGAGCAGATAACGGCACTGGTTTCA TCTATGACTGGCATACCAGTCAGCCAGATGCTGGAAGGTGAAGCTTCCAAACTGCTGAATATGGAAGACCGCATACACGA GCGTATGGTAGACCAGGAAGAGGCAGTAAAAGCCGTAGCTGAAGCTATCCGCCGCAGCCGGGCAGGGCTCAAAGACCCGC GCCGCCCAATAGGCAGTTTCCTATTTTTAGGCCCTACCGGCGTAGGCAAAACCGAACTGGCACGCAGTTTAGCATGGTTT TTATTTGATGATGAAACCGCTATGGTCAGGCTGGATATGTCTGAATACCAGGAAAAACACACTGTCTCCCGTCTGGTAGG TGCACCTCCCGGATATGTGGGCTACGACGAAGGCGGGCAGCTTACCGAACTGGTCCGCCGCCGCCCGTACCGGGTTATCC TGCTGGACGAGATTGAAAAAGCCCACCCGGATGTATACAACACCCTGCTCCAACTTCTGGATGACGGCCGTCTGACGGAC GGGCAGGGCAGAACGGTGGATTTTAAAAACACGGTTATCATCATGACTTCCAACGCAGGTATAGAAACTATAAAACGCGA ATCTGCCTTGGGTTTTGCCATCAGGAATGATGACTCCAAGACCCGGCAGGACAGCTATGAACGCATGAAAGACAAGGTCA TGGCCGAGGTTAAAAAGACCTTCCGTCCGGAGTTTATAAACCGGGTGGATGAAATAATTGTCTTCCACGAGCTGGCTGAA GAACAGATACGCAAGATAGTAGATTTCATGATAAAAGATGTCTCCAAACGCCTTGATGAACGCAAACTCAAGCTGGAGCT GACCGATGCCGCCAAGGGCTGGCTGGCCAAGGTAGGGTATGACCCGGCCTTTGGTGCCAGACCCCTTCGCAGAGCCATTG AAAGATACATTGAAAGCCCGCTGGCTGGCAAGCTGCTTCGCAATGAGTTTAGTGAAAATGCTACAATACTGGTGGACAAG GCGGATGAAGCTCTGAGCTTCAGCCAGAAGACCGCCTGA Protein sequence : MRQEKFTEQAQEALSASQLLVQEYQHSQWDVEHVLLALIRQEKGLVGEIIKELKVSSEEITKQLAEALKRSPKAVGGNIQ IYPTPRIISLLQTANNEADRLRDEFIGTEHLLVAIAGDTQGESARILKQFGIDQEKVYSALQKIRGGHRVTDARAESKYR ALAKYSRDLTELAKQNKIDPVIGRDQEIRRVMQILSRRTKNNPVIVGEAGVGKTAIAEGVAQKIADNDVPESLRDRKVMA LDMGALVAGSKFRGEFEERLKAVMDEVRQSAGEIILFIDEIHTVVGAGAAEGAIDASNMLKPALSRGELQTIGATTLDDY RKYIEKDTALERRFQPVFVEEPSVDQTIEILKGIRPKYEAHHKLKISDAALEAAVRLSSRYITERQLPDKAIDLIDEAAS KLRLDSESAPPEVKKLENELRQTGIEEEAASQLQEYEKAAELKAEKMRLEEKFNTAREEWLKQEKIAEEVTAEQITALVS SMTGIPVSQMLEGEASKLLNMEDRIHERMVDQEEAVKAVAEAIRRSRAGLKDPRRPIGSFLFLGPTGVGKTELARSLAWF LFDDETAMVRLDMSEYQEKHTVSRLVGAPPGYVGYDEGGQLTELVRRRPYRVILLDEIEKAHPDVYNTLLQLLDDGRLTD GQGRTVDFKNTVIIMTSNAGIETIKRESALGFAIRNDDSKTRQDSYERMKDKVMAEVKKTFRPEFINRVDEIIVFHELAE EQIRKIVDFMIKDVSKRLDERKLKLELTDAAKGWLAKVGYDPAFGARPLRRAIERYIESPLAGKLLRNEFSENATILVDK ADEALSFSQKTA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clp | YP_003330634.1 | ATP-dependent Clp protease ATP-binding subunit | VFG0079 | Protein | 0.0 | 54 |
| clp | YP_003330634.1 | ATP-dependent Clp protease ATP-binding subunit | VFG0080 | Protein | 7e-149 | 49 |
