Gene Information

Name : Taci_0039 (Taci_0039)
Accession : YP_003316561.1
Strain : Thermanaerovibrio acidaminovorans DSM 6589
Genome accession: NC_013522
Putative virulence/resistance : Virulence
Product : polysaccharide biosynthesis protein CapD
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1086
EC number : -
Position : 47078 - 48940 bp
Length : 1863 bp
Strand : -
Note : PFAM: polysaccharide biosynthesis protein CapD; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: ppd:Ppro_3385 polys

DNA sequence :
ATGAAGAAATCGCTCCCCGCCCACACGTCGGCGGTTCGCAAGATCCTGCTGGATGTGGCCTGTGCTCTCGTTTCGTCCCT
CGCAACCTTCGTCCTCAGGCTGGATCTGCCGCTGCCGGTCAATTTCGCCCCATCGCTGGTCCCCTACTCTATCCTGGCGA
CGGCCACTAAGCTGGGTCTGATCCTTTGGTTGGGCACATGGCGCCAGTCCTGGCGGAACTCCTCGGTGCCGGATCTGATC
CAGCTTCTGAAGGTCATGGTCGCCTTCGTGGTGATCATGTCCGGGGTGGGCTTCGTACTGGGCCCCGCAAACATGCCCCT
CCCCCGGGGGATACCCTTCATTGACGGGGCCATCACTCTCCTCTTGTGGGGGGGCATTAGGCTTCTGGCCCGGGGTTTTC
ACGAACGGGAGGGGCATAGCGGGTCCCACCTCAGGCCGGTGGTCATAGCCGGAGCGGGATCCGCAGGCACGTCGTTGGCC
CGGGAGATCCAGAGAAACCGGTCCTGCGGCATGAGGGTAGCGGCCTTTCTGGACGATGACCCGGCGAAGCTGAAGATGAC
CATCCTGGGCGTGCCTGTGGCGGGGACGCTGGACCAGCTTGGGGAGGTGCTGGACCGGTTCGGGGCCAGCGAGGTTTTGA
TCGCGATGCCATCCGCCCCGGGTTCGGCGGTGAGGCTCGTCATGGAGCAGGCCTCATCCAGGCGGGTCCGGGCCAGGATA
ATCCCCGCCATAGCGGAGGTCCTCTCCGGCCGGGTCTCCCTGGACCTGGTGAGGGACGTGGAGGTGGAGGACCTGCTTCG
CCGTGAGGCGGTGCGGCTGGACCTGGATGAGATCGGCAGCTACCTGCGAGGTCAGCGGGTTATGATAACCGGCGCAGGAG
GATCGATAGGAAGCGAGTTGGTCCGACAAGCGATCCCCTTCGGTCCGTCGCTCCTGGTGCTCCTCGGTCGAGGGGAGAAC
AGCCTGCACCAACTTGAGATGGAGCTAAAGGGGATGGACCCGGTGCCTCCCTTCGTCACCGTAGTTGCGGACGTGAGGGA
CAGGACCAGACTCGGAAGGGTTATAGCCCGTTACCGTCCATCGGTGGTGTTTCACGCGGCGGCCCACAAGCACGTTCCCA
TGATGGAGGAACACCCGGAGGAGGCGGTAAAGAACAACGTGCTGGGGACGCTGAACGTGGTGGAGTGTTGCATTGAGGCT
GGTGTATCAACCCTGGTCAACATATCCACCGACAAGGCGGTGAACCCAACGTCGGTGATGGGAGCATCCAAGCGGCTGGC
GGAGATGGTGGTACGCCGGGTGGCGGACCGGGTGCCTCCGGGCGGAGCTTACGTGTCGGTTCGGTTCGGCAACGTGCTGG
GCAGTCGAGGGAGCGTGGTCCCCCTGTTCAAGGAGCAGATCCGACGCGGAGGACCGGTTACGGTTACCGATCCGGAGATG
GTACGCTACTTTATGACCATCCCGGAGGCGGCGCAGCTGGTGCTTCAGGCGGGGGGCATGGGGATGAACGGGGCGGTGTT
CGTGTTGGACATGGGGGAACCGGTGAGGATCGTGGACATGGCGAGGGACCTGATCCGCCTATCGGGCTTGGAGCCCGATA
GGGACATCCGTATAGAGTTCACCGGCCGTCGCCCGGGAGAGAAGCTGTACGAGGAGCTCTTGACCGCCGAGGAGGGAACC
GAGGCCAGCCGGCACAGTAAGATCTTCGTGGCCAGGACGGAGCATATGGGTCTGGAGCTGGACCAGGTCATCCAACGTCT
CAGCTTTGCTGCGGAGGTTGGGGACCAGGAAGCCATAAGGCGGATCCTGTCGGAGGCGATCCCGACCAGCCGTTTGGAGG
GCATTGGCCCCGGGGGGGATTGA

Protein sequence :
MKKSLPAHTSAVRKILLDVACALVSSLATFVLRLDLPLPVNFAPSLVPYSILATATKLGLILWLGTWRQSWRNSSVPDLI
QLLKVMVAFVVIMSGVGFVLGPANMPLPRGIPFIDGAITLLLWGGIRLLARGFHEREGHSGSHLRPVVIAGAGSAGTSLA
REIQRNRSCGMRVAAFLDDDPAKLKMTILGVPVAGTLDQLGEVLDRFGASEVLIAMPSAPGSAVRLVMEQASSRRVRARI
IPAIAEVLSGRVSLDLVRDVEVEDLLRREAVRLDLDEIGSYLRGQRVMITGAGGSIGSELVRQAIPFGPSLLVLLGRGEN
SLHQLEMELKGMDPVPPFVTVVADVRDRTRLGRVIARYRPSVVFHAAAHKHVPMMEEHPEEAVKNNVLGTLNVVECCIEA
GVSTLVNISTDKAVNPTSVMGASKRLAEMVVRRVADRVPPGGAYVSVRFGNVLGSRGSVVPLFKEQIRRGGPVTVTDPEM
VRYFMTIPEAAQLVLQAGGMGMNGAVFVLDMGEPVRIVDMARDLIRLSGLEPDRDIRIEFTGRRPGEKLYEELLTAEEGT
EASRHSKIFVARTEHMGLELDQVIQRLSFAAEVGDQEAIRRILSEAIPTSRLEGIGPGGD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1D AAA64643.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 3e-81 45
SSP0063 YP_300153.1 capsular polysaccharide biosynthesis protein Not tested SCC15305cap Protein 2e-79 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Taci_0039 YP_003316561.1 polysaccharide biosynthesis protein CapD VFG1300 Protein 4e-78 44
Taci_0039 YP_003316561.1 polysaccharide biosynthesis protein CapD VFG0029 Protein 9e-66 44