Gene Information

Name : Sked_06500 (Sked_06500)
Accession : YP_003313444.1
Strain : Sanguibacter keddieii DSM 10542
Genome accession: NC_013521
Putative virulence/resistance : Virulence
Product : cobalamin/Fe3+-siderophore ABC transporter ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 740824 - 741675 bp
Length : 852 bp
Strand : +
Note : PFAM: ABC transporter

DNA sequence : 
GTGACTGCTACCGACACCCCGGACCCGGAGGACTCGACGTCATCGGCAGCCCCGTCGGGCGCTGCGCCGGCCGTCGCCCC
CGTGCGCGGCACCGGGCTGCGCCTCGCCTACGACCAGCGGGTGGTCGTCGACGGTCTCGACGTCGAGATCCCCGCGGGGT
CGTTCACCGTGATCGTCGGCCCGAACGGGTGCGGCAAGTCGACGCTGCTGCGCGCCCTCGGCCGGACGCTCACCCCGCGC
GCCGGGCACGTCGACCTCTACGGGGAACCGCTCGCGTCGCTCGGCAACAAGCAGATCGCCAGGATGCTGGCACTGCTCCC
GCAGACACCGGTCGCCCCCGAGGCGATCACGGTGCGCGACCTCGTGGGTCGCGGCCGCTACGCCTACCAGACGCTCCTGC
GCCAGTGGTCGGCGTCCGACGGTGTCGCGGTGCGTGCCGCCATGGAGGCCACCGGGACCACCGACCTCGCCGACCGGAAG
GTGTCCGAGCTGTCGGGCGGGCAGCGCCAGCGCGTGTGGATCGCGATGGTGCTCGCCCAGGACACCGACCTGCTGCTGCT
CGACGAGCCCACCACCTTCCTCGACATCACGCACCAGGTGGACGTCCTCGACCTGTGCGCGCAGATGCACCGGGAGGGAC
GGACCCTGGTCGCGGTCCTCCACGACCTCAACCTCGCTGCCCGGTACGCGACGCACATGATCGCGATGCGCGACGGCGAG
GTCGTCGCCACCGGCACCCCGCACGAGGTGGTCACGGCGGAGGGTGTCGAGGAGATCTTCGGCCTGCGCTGCCGCATCAT
CACCGACCCCGAGAGCGAGACGCCGCTCGTGGTCCCGCTCGTCACCCGGTGA

Protein sequence : 
MTATDTPDPEDSTSSAAPSGAAPAVAPVRGTGLRLAYDQRVVVDGLDVEIPAGSFTVIVGPNGCGKSTLLRALGRTLTPR
AGHVDLYGEPLASLGNKQIARMLALLPQTPVAPEAITVRDLVGRGRYAYQTLLRQWSASDGVAVRAAMEATGTTDLADRK
VSELSGGQRQRVWIAMVLAQDTDLLLLDEPTTFLDITHQVDVLDLCAQMHREGRTLVAVLHDLNLAARYATHMIAMRDGE
VVATGTPHEVVTAEGVEEIFGLRCRIITDPESETPLVVPLVTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-54 53
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 9e-55 51
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 9e-55 51
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 8e-55 51
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 8e-55 51
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-41 46
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-45 45
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 2e-47 44
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 2e-47 44
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 1e-27 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sked_06500 YP_003313444.1 cobalamin/Fe3+-siderophore ABC transporter ATPase BAC0164 Protein 1e-41 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sked_06500 YP_003313444.1 cobalamin/Fe3+-siderophore ABC transporter ATPase VFG0925 Protein 2e-63 59
Sked_06500 YP_003313444.1 cobalamin/Fe3+-siderophore ABC transporter ATPase VFG1042 Protein 1e-41 46