|
Name : Sked_05080 (Sked_05080) Accession : YP_003313303.1 Strain : Sanguibacter keddieii DSM 10542 Genome accession: NC_013521 Putative virulence/resistance : Virulence Product : chaperone ATPase Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 560708 - 563284 bp Length : 2577 bp Strand : + Note : PFAM: C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); ATPase family associated with various cellular activities (AAA) DNA sequence : ATGTTCGAGAGATTCACCGACCGAGCCCGTCGGGTGGTCGTCCTTGCCCAAGAAGAGGCACGGATGCTCAACCACAACTA CATCGGTACCGAGCACATCCTGCTCGGCCTCATCCACGAGGGCGAGGGTGTCGCGGCGAAGGCCCTGGAGTCCCTCGGCA TCTCCCTCGACGCCGTGCGGTCACAGGTCACCGAGATCATCGGCGAGGGCCAGCAGGCCCCCTCGGGCCACATCCCCTTC ACGCCGCGCGCCAAGAAGGTGCTCGAGCTGTCCCTGCGCGAGGCCCTGCAGCTCGGCCACAACTACATCGGCACCGAGCA CATCCTGCTCGGCCTCATCCGTGAGGGCGAGGGCGTCGCCGCCCAGGTCCTCACGAAGCTGGGCGCCGACCTCAACCGCG TGCGCCAGCAGGTCATCCAGCTGCTCTCGGGCTACCAGGGCAAGGAGCCCGTCGCCTCGGGCGCACCTGCCGAGGGCACC CCGGCCGGCTCCGCCGTGCTCGACCAGTTCGGCCGCAACCTCACGCAGGCTGCCCGCGAGGGCAAGCTCGACCCCGTGAT CGGTCGCGCCAAGGAGATCGAGCGCGTCATGCAGGTTCTCAGCCGACGCACCAAGAACAACCCGGTGCTCATCGGTGAGC CTGGCGTCGGCAAGACGGCCGTCGTCGAGGGCCTCGCCCAGGACATCGTCTCCGGCGACGTCCCCGAGACGCTCAAGGAC AAGCAGCTCTACACGCTCGACCTCGGCTCGCTGGTGGCCGGGTCCCGCTACCGCGGTGACTTCGAGGAGCGCCTGAAGAA GGTCCTCAAGGAGATCCGCACCCGCGGCGACATCATCCTGTTCATCGACGAGATCCACACCCTCGTGGGTGCGGGTGCCG CCGAGGGCGCCATCGACGCCGCGTCGATCCTCAAGCCGATGCTCGCCCGCGGGGAGCTCCAGACCATCGGAGCCACCACC CTCGACGAGTACCGCAAGCACATCGAGAAGGACGCCGCCCTCGAGCGCCGGTTCCAGCCGGTCCAGGTCGCCGAGCCGTC CCTCCCGCACGCGATCGAGATCCTCAAGGGTCTGCGCGACCGCTACGAGGCGCACCACCGCGTCTCCATCACGGACTCCG CGCTCGTGGCGGCGGCGACCCTCGCCGACCGTTACGTCAACGACCGCTTCCTCCCCGACAAGGCCATCGACCTCGTCGAC GAGGCGGGCGCGCGTCTGCGCATCCGTCGCATGACCGCTCCGCCGGAGCTGCGCGAGCTCGACGAGCAGATCGCCGAGGC GCGCCGCAACAAGGAGTCGGCCATCGACGAGCAGGACTTCGAGAAGGCCGCCGGCCTGCGTGACACCGAGAAGCAGCTCA CGCAGCAGCGCGCCGACAAGGAGAAGGCCTGGAAGTCCGGTGACCTCGACACGGTCGCCGAGGTGGACGAAGAGCTCATC GCCGAGGTGCTGGCCATGTCGACCGGCATCCCGGTCTTCAAGCTCACCGAGGAGGAGTCCTCGCGTCTGCTGAAGATGGA GGACGAGCTGCACAAGCGCGTCGTCGGTCAGGACATCGCCATCAAGGGCCTGTCGCAGGCGATCCGCCGTACGCGTGCTG GCCTCAAGGACCCGAAGCGTCCCGGTGGCTCGTTCATCTTCGCCGGTCCGACCGGTGTCGGTAAGACCGAGCTCGCCAAG GCGCTCGCCGAGTTCCTCTTCGGCGACGAGGACGCGCTCATCCAGCTCGACATGTCGGAGTTCTCGGAGAAGCACACCGT CTCGCGCCTCTTCGGCTCGCCTCCCGGCTACGTCGGCTACGACGAGGGTGGCCAGCTCACCGAGAAGGTGCGTCGCAAGC CGTTCTCCGTGGTCCTCTTCGACGAGGTCGAGAAGGCGCACGCGGACATCTTCAACTCGCTCCTGCAGATCCTCGAGGAC GGTCGCCTGACCGACTCGCAGGGCCGCATGGTCGACTTCAAGAACACCGTGATCATCATGACCACCAACCTCGGTACCCG TGACATCGCCAAGGGCGTCCAGACCGGCTTCAACGCCGGCGGCGACACCGTGACGAGTTACGAGCGCATGAAGGCCAAGG TCAACGAGGAGCTCAAGCAGCACTTCCGCCCCGAGTTCCTCAACCGTGTCGACGACACCATCGTGTTCCCGCAGCTCACG CAGGACGAGATCGTCAAGATCGTCGACCTCATGATCGCGAAGCTCGACGGCCGTCTGCGCGACAAGGACATGGGCATCGA GCTCACGCCCGCCGCCAAGATCCTCCTCTCCGAGAAGGGGTACGACCCGGTCCTGGGTGCACGGCCGCTGCGCCGCGCCA TCCAGCGCGAGATCGAGGACGTCCTGTCGGAGAAGATCCTCTTCGGCGACATCAAGGCCGGCGAGATGATCCTCGTCGAC GCCGAGGGCGAGGGTCTGCTGGGCGAGTTCTCGTTCCGCGGGGTCCCCAAGAACCTGCACAAGCGTGACGCCGTCGTCGT GGCTGCCGCCGCAGCGACCGGCGGGTCCGACGGCCCGGTGGGCCTGAGCGACCTCCCGCCGACCGGTGGGACCTCAGCCG CGGCCGACCCCGCCTGA Protein sequence : MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLDAVRSQVTEIIGEGQQAPSGHIPF TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLTKLGADLNRVRQQVIQLLSGYQGKEPVASGAPAEGT PAGSAVLDQFGRNLTQAAREGKLDPVIGRAKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQDIVSGDVPETLKD KQLYTLDLGSLVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDEIHTLVGAGAAEGAIDAASILKPMLARGELQTIGATT LDEYRKHIEKDAALERRFQPVQVAEPSLPHAIEILKGLRDRYEAHHRVSITDSALVAAATLADRYVNDRFLPDKAIDLVD EAGARLRIRRMTAPPELRELDEQIAEARRNKESAIDEQDFEKAAGLRDTEKQLTQQRADKEKAWKSGDLDTVAEVDEELI AEVLAMSTGIPVFKLTEEESSRLLKMEDELHKRVVGQDIAIKGLSQAIRRTRAGLKDPKRPGGSFIFAGPTGVGKTELAK ALAEFLFGDEDALIQLDMSEFSEKHTVSRLFGSPPGYVGYDEGGQLTEKVRRKPFSVVLFDEVEKAHADIFNSLLQILED GRLTDSQGRMVDFKNTVIIMTTNLGTRDIAKGVQTGFNAGGDTVTSYERMKAKVNEELKQHFRPEFLNRVDDTIVFPQLT QDEIVKIVDLMIAKLDGRLRDKDMGIELTPAAKILLSEKGYDPVLGARPLRRAIQREIEDVLSEKILFGDIKAGEMILVD AEGEGLLGEFSFRGVPKNLHKRDAVVVAAAAATGGSDGPVGLSDLPPTGGTSAAADPA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 77 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 3e-94 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sked_05080 | YP_003313303.1 | chaperone ATPase | VFG0079 | Protein | 0.0 | 61 |
| Sked_05080 | YP_003313303.1 | chaperone ATPase | VFG0080 | Protein | 2e-152 | 51 |
