Gene Information

Name : Sked_37320 (Sked_37320)
Accession : YP_003316449.1
Strain : Sanguibacter keddieii DSM 10542
Genome accession: NC_013521
Putative virulence/resistance : Virulence
Product : Fe3+-siderophore ABC transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 4171318 - 4172442 bp
Length : 1125 bp
Strand : -
Note : PFAM: FecCD transport family

DNA sequence :
ATGACGACGACCTCGACGAGAGACACCGGCACCCAGCCGCCCGGCGGGCACCTGCCCCCGGGTGGTCCGGTGACCGCAGC
GGGTGGCGAGCTGCCCGAGGCTGCGACAGCCCCCGCCGGTGTCGCCCACACCAACGCGACCCGGACCTTCTGGCTGCTCG
TGCTCGTCGGGGTGCTCGCCGTCGCGCTGCTGCTCAGCCTCGCCGTCGGGTCCAAGACCATCCCCTTCGGCACGGTCCTC
AGCGGGCTGTTCTCGCCCGACGGGTCGAACGACCACATCATCGTGCGCGACATGCGCGCGCCACGGACCGTGCTCGGGCT
CCTCGTCGGCATCGCCCTCGGGCTCTCGGGCGCGATGATCCAGGCGCTGACCCGCAACCCGCTCGCCGACCCCGGGATCC
TCGGGGTCAACGCGGGAGCCGGGTTCGCCGTCGTCGTGGGTGTCGCCGTCTTCGGCGTGGTGAGCATCCAGCAGTACATC
TGGTTCGCCTTCGTCGGGGCCGTGGTCACGACGGTGGTCGTCTACGTCATCGGGTCGATGGGCCGCGGGGGGACCACCCC
GGTCCGGCTCACCCTCGCCGGGATCGCCATCGGCGCGGTCCTCGGAGGGATCTCGTCGGGCATCACGCTGCTCAACCCGC
GTGTCTTCGACGCGATGCGGTTCTGGGGAGCCGGGACCCTGAGCAACCGCACGTGGGAGATGGTCGCGACCGTCACCCCG
TTCATCGTCGCCGGGACGCTCGTCGCGCTCCTCGTCGCCCGGCCGCTCAACGCGGTCGCGCTCGGCGACGACCTCGCCAG
CTCCCTCGGGGCGAACCTCGTCCGCACCCGGGTGTGGGTCGTCGTGGGCGTCACGCTGCTGTGCGGCGCGGCCACCGCGG
CCGCCGGGCCGATCGGCTTCGTCGGGCTCATGGTCCCGCACGTCGCCCGCTGGTTCGTCGGGCCCGACCAGCGCTGGATC
ATGCCGTACACGCTCGTCATGGCACCGACGCTGCTGCTCGTCTCCGACGTCGTCGGGCGTGTGGTGCTGCGACCCGGCGA
GCTGCAGGTGGGCATCGTCACGGCCTTCGTCGGGGCGCCCGTCCTCATCTGGCTCGTCCGACGACGGAAGGTGAGCGGGC
TGTGA

Protein sequence :
MTTTSTRDTGTQPPGGHLPPGGPVTAAGGELPEAATAPAGVAHTNATRTFWLLVLVGVLAVALLLSLAVGSKTIPFGTVL
SGLFSPDGSNDHIIVRDMRAPRTVLGLLVGIALGLSGAMIQALTRNPLADPGILGVNAGAGFAVVVGVAVFGVVSIQQYI
WFAFVGAVVTTVVVYVIGSMGRGGTTPVRLTLAGIAIGAVLGGISSGITLLNPRVFDAMRFWGAGTLSNRTWEMVATVTP
FIVAGTLVALLVARPLNAVALGDDLASSLGANLVRTRVWVVVGVTLLCGAATAAAGPIGFVGLMVPHVARWFVGPDQRWI
MPYTLVMAPTLLLVSDVVGRVVLRPGELQVGIVTAFVGAPVLIWLVRRRKVSGL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagA YP_005680309.1 hypothetical protein Not tested PiCp 1 Protein 1e-16 43
fagA YP_005682399.1 hypothetical protein Virulence PiCp 1 Protein 1e-16 43
fagA YP_003782432.1 integral membrane protein Virulence PiCp 1 Protein 1e-16 43
fagA YP_005684490.1 hypothetical protein Not tested PiCp 1 Protein 1e-16 43
SPN23F_09540 YP_002510937.1 ferric siderophore ABC transporter permease Virulence PPI-1 Protein 1e-27 41
SP_1033 NP_345508.1 iron ABC transporter permease Virulence PPI-1 Protein 1e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sked_37320 YP_003316449.1 Fe3+-siderophore ABC transporter permease VFG0926 Protein 1e-35 53