Gene Information

Name : Sked_37300 (Sked_37300)
Accession : YP_003316447.1
Strain : Sanguibacter keddieii DSM 10542
Genome accession: NC_013521
Putative virulence/resistance : Virulence
Product : cobalamin/Fe3+-siderophore ABC transporter ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 4169268 - 4170140 bp
Length : 873 bp
Strand : -
Note : PFAM: ABC transporter

DNA sequence : 
ATGACCACCGACGTGCTCGGCACCACCAGCAGCTCGACAAGCGCAGCGGGGAGCCCTCAGGGCGTCGCGGGCCCGAGGCT
CCGCGCCGAGGGCGTCACCATCGGGTACTCCGAGCACCCGGTGTCGAAGGGCCTGAGCGTCGAGATCCCCGACGACTCCT
TCACGGTGATCGTCGGGCCGAACGCCTGCGGCAAGTCCACCCTGCTGCGTGCGCTGTCCCGCCTGCTCAAGCCCTCCGAG
GGGCAGGTCGTGCTCGACGGCGAGGCCATCACGTCCTACAAGGCCAAGGAGGTCGCACGCCGCCTCGGCCTGCTGCCGCA
GACGTCGATCGCGCCCGACGGCATCACCGTCGCCGACCTCGTGGCCCGCGGCCGCTACCCGCACCAGAAGCTGCTCCGGC
AGTGGTCCGTCGAGGACGAGGCGTCGGTGGTCCGGGCGCTCGAGGCCACGCAGGTCACCGCGCTGTCCGGGCGCCTGGTC
GACGAGCTGTCGGGCGGGCAGCGTCAGCGCGTCTGGGTGTCCATGGTGCTCGCGCAGGAGACGCCGCTGCTGCTCCTCGA
CGAGCCCACGACCTTCCTCGACATCGCCCACCAGATCGAGCTGCTCGAGCTCTTCGGGGACCTCAACCGCCGCGGCCACA
CCCTCGTCGCCGTGCTGCACGACCTCAACCACGCCTGCCGCTACGCGACCCACCTCATCGCCATGAAGGACGGCGCCGTC
GTCGCCCAGGGGCGGCCCGAGGAGATCATCACCGCGGAGCTCGTCGAGGAGGTCTTCGGCCTGCGCTGCATGATCATCGA
GGACCCGGTCAGCAAGACCCCCCTCGTCATCCCGCTCGGCCGCCCGCACACCGCGGAGGAGCCGGAGGCGTAG

Protein sequence : 
MTTDVLGTTSSSTSAAGSPQGVAGPRLRAEGVTIGYSEHPVSKGLSVEIPDDSFTVIVGPNACGKSTLLRALSRLLKPSE
GQVVLDGEAITSYKAKEVARRLGLLPQTSIAPDGITVADLVARGRYPHQKLLRQWSVEDEASVVRALEATQVTALSGRLV
DELSGGQRQRVWVSMVLAQETPLLLLDEPTTFLDIAHQIELLELFGDLNRRGHTLVAVLHDLNHACRYATHLIAMKDGAV
VAQGRPEEIITAELVEEVFGLRCMIIEDPVSKTPLVIPLGRPHTAEEPEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-58 54
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 1e-58 54
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 1e-58 54
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-58 54
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 6e-55 51
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 3e-59 49
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 3e-59 49
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 3e-46 49
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 5e-45 44
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-43 42
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-43 42
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-43 42
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-43 42
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 8e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sked_37300 YP_003316447.1 cobalamin/Fe3+-siderophore ABC transporter ATPase BAC0164 Protein 2e-46 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sked_37300 YP_003316447.1 cobalamin/Fe3+-siderophore ABC transporter ATPase VFG0925 Protein 5e-79 64
Sked_37300 YP_003316447.1 cobalamin/Fe3+-siderophore ABC transporter ATPase VFG1042 Protein 2e-46 49