Gene Information

Name : Sked_36340 (Sked_36340)
Accession : YP_003316354.1
Strain : Sanguibacter keddieii DSM 10542
Genome accession: NC_013521
Putative virulence/resistance : Virulence
Product : Fe3+-siderophore ABC transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 4066701 - 4067807 bp
Length : 1107 bp
Strand : -
Note : PFAM: FecCD transport family

DNA sequence :
GTGCCCACGGGCGTCGCCGTGCCCACGGGCGTCGCCGTGCCCACGGTCGGGACAGGGCCAGCCCAGCCCGACCCCGACGA
GGGCTCTCGCCGCAGCGGTCTTCGCCGCCGGACCGCGGTGCTCACCGCCGGTCTGGTCGTGGTCGCCGCGCTCGTCCTGC
TCGCCGGGATCGCCTCGCTCGCCGTCGGCGCCCGCCCGATCGCCCCGACCACCGTGGTGCGGGCACTCCTCGCCTACGAC
GACGCCGACCCGCTGCACCTCATGGTCCGCGAGCTCCGGGTCCCCCGGACCGTCCTCGCGATCGTCGTCGGTGCAGCGCT
GGCCGTCTGCGGCGCGCTCATCCAGGCCTTCACCCGCAACCCCCTCGCCGACCCCGGGATCCTCGGGGTCAACGCGGGGG
CGTCCTTCGCGGTGACCTTCGCCGTGGGTGTCCTCGGCCTGACCGCGCCGGGCTCCTACGTCCCCTTCGCGCTGCTCGGC
GCGCTGGCCCTCACGCTGCTCGTGTACCTGCTCGGGTCCTTCGGCAGGTCCGGGGCCACCCCGATGAAGCTCACCCTCGC
GGGCGTCGCCCTCGGCGCGACCTTCACGGGGCTGACCACCGCCATCGTGCTCCGCGACCAGAGCACCCTCCAGGTGATGC
GGTTCTGGGGCGTCGGGTCGGTCGGCGGGCGCACCCTCGACCAGCTGACCTGGGCTCTGCCGCTCGTGGCCGCCGGGCTG
GTGCTCGCCCTCGTGTGCGCGCGGTCGCTGAACGCCCTCGCGCTCGGCGACGACCTGGCGCACTCCCTCGGGGCCCGCGT
CGTCACGGTCCGTCTGCTCGTGGTGGTCTCGGTGACCCTGCTCGCCGGGACGAGCGTCGCCGCGGCGGGCCCCATCGCCT
TCGTCGGCATCATGATCCCGCACGCGGTCCGCTGGTTCACCGGCCCCGACCAGCGGTGGGTCATCGCCTACTCGATGCTC
GTCGGCCCGGTCTTCCTGCTGCTCGCCGACGTCCTGGGACGCGTCGTCCTGCCCAGCGGTGAGCTCCGCGTCGGCATCGT
CACCGGGATCCTCGGGGCGCCCGTCCTCGTCGCGCTCGTGCGCCGCAGGCAGGTGAGCGAGCTGTGA

Protein sequence :
MPTGVAVPTGVAVPTVGTGPAQPDPDEGSRRSGLRRRTAVLTAGLVVVAALVLLAGIASLAVGARPIAPTTVVRALLAYD
DADPLHLMVRELRVPRTVLAIVVGAALAVCGALIQAFTRNPLADPGILGVNAGASFAVTFAVGVLGLTAPGSYVPFALLG
ALALTLLVYLLGSFGRSGATPMKLTLAGVALGATFTGLTTAIVLRDQSTLQVMRFWGVGSVGGRTLDQLTWALPLVAAGL
VLALVCARSLNALALGDDLAHSLGARVVTVRLLVVVSVTLLAGTSVAAAGPIAFVGIMIPHAVRWFTGPDQRWVIAYSML
VGPVFLLLADVLGRVVLPSGELRVGIVTGILGAPVLVALVRRRQVSEL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagA YP_003782432.1 integral membrane protein Virulence PiCp 1 Protein 4e-13 42
fagA YP_005684490.1 hypothetical protein Not tested PiCp 1 Protein 4e-13 42
fagA YP_005680309.1 hypothetical protein Not tested PiCp 1 Protein 4e-13 42
fagA YP_005682399.1 hypothetical protein Virulence PiCp 1 Protein 4e-13 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sked_36340 YP_003316354.1 Fe3+-siderophore ABC transporter permease VFG0926 Protein 3e-24 46