Gene Information

Name : Sked_36050 (Sked_36050)
Accession : YP_003316325.1
Strain : Sanguibacter keddieii DSM 10542
Genome accession: NC_013521
Putative virulence/resistance : Unknown
Product : hydroxymethylbilane synthase
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG0181
EC number : 2.5.1.61
Position : 4033734 - 4034672 bp
Length : 939 bp
Strand : +
Note : PFAM: Porphobilinogen deaminase, C-terminal domain; Porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase

DNA sequence : 
GTGACCGGACACCCCGCCCTCCGCATCGGTACCCGCAGCAGCCTCCTGGCGCTCACGCAGACCGGCACCGTCGCCGACGA
CCTGCGCCGGCTCACCGGCCGCCCCGTCGAGATCGTGCCGGTGACGACCGACGGCGACGTGCTCACCGGCTCGCTCTCCC
AGATGGGTGGCACCGGCGTGTTCGTCACCGCCCTGCGCGCCGCGCTCCTCGACGACCGGTGCGACGTCGCCGTGCACTCC
CTCAAGGACCTGCCGACCGCCGGCGTCCTCGGCCTCCAGCACGTCACCCCGGTCCGCCAGGACCCGCGCGACGCCCTCTG
CTCGCGCGCCGGTCACCGCCTCGCCGACCTCCCGCACGGCGCCCGCGTCGGCACGGGCTCGCCCCGCCGCGCCGCCCAGC
TGCGCCTCGTCCGCCCCGACCTCGACGTCGTCGACATCCGCGGGAACATCGACACCCGACTCGGACGCGTGCACCCCGAG
ACCGGCGACCTCGACGCCGTGGTCCTCGCCGCGGCCGGCCTCAACCGCATCGGGCGCGAGCACGCGATCACCGAGCTCAT
CTCCGTGACCGACATGGCCCCCGCCCCCGGGCAGGGCGCCCTCGCCGTCGAGACCCGCAGCAGCCTCCTCGAGGAGGACC
CCGTGGTCGCCCGGGCCTTCGACCAGCTCGACGACCCCGCGACCTCGCTGTCCGTGCTGGCCGAGCGCGCGCTGCTCGCC
CGGCTCGAGGCCGGGTGCGCAGCCCCCGTCGGCACGCACGCGACCGTGTCCGACGGGCTGCTCACCCTGCACGCCGTCGT
CGCCCGCCCGGACGGCAGCGAGCAGCTGCGCCACAACCAGTCGACCGAGGTCGCCGACACCTCGACCGCCGAGGCAGTCG
CCCTCGGCGAGGCCGTAGCCGACCACTTCCTGGCGCTCGGCGCAGCGTCCTTCATCTGA

Protein sequence : 
MTGHPALRIGTRSSLLALTQTGTVADDLRRLTGRPVEIVPVTTDGDVLTGSLSQMGGTGVFVTALRAALLDDRCDVAVHS
LKDLPTAGVLGLQHVTPVRQDPRDALCSRAGHRLADLPHGARVGTGSPRRAAQLRLVRPDLDVVDIRGNIDTRLGRVHPE
TGDLDAVVLAAAGLNRIGREHAITELISVTDMAPAPGQGALAVETRSSLLEEDPVVARAFDQLDDPATSLSVLAERALLA
RLEAGCAAPVGTHATVSDGLLTLHAVVARPDGSEQLRHNQSTEVADTSTAEAVALGEAVADHFLALGAASFI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00327 YP_008207792.1 Porphobilinogen deaminase Not tested AbaR25 Protein 5e-29 41
BJAB0868_00331 YP_008211657.1 Porphobilinogen deaminase Not tested AbaR26 Protein 5e-29 41