Gene Information

Name : Sked_32340 (Sked_32340)
Accession : YP_003315964.1
Strain : Sanguibacter keddieii DSM 10542
Genome accession: NC_013521
Putative virulence/resistance : Resistance
Product : antimicrobial peptide ABC transporter ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3602882 - 3603676 bp
Length : 795 bp
Strand : +
Note : PFAM: ABC transporter

DNA sequence : 
ATGTCACCCACCGCCAGCACCGCCTCCGTCCCGCCCGCGGGCGCGGCGGACGCGTCCGACGCCATCGCGTCGGCCCGCGG
CCTCACCAAGACCTACGGCAAGGGCTCGACGGTCGTCCGCGCCCTCGACGGCGTCGACGTCGACTTCGCCCGGGGGCAGT
TCACCGCGATCATGGGGCCGTCAGGCTCCGGCAAGTCGACGCTCATGCACTGCATGGCGGGGCTCGACACCCCGACCTCG
GGCACCGTCGTCGTCGACGGCCTCACGGTCTCCTCGATGAACCAGCGCCAGCTCACCCGGTTGCGGCGCACCCAGCTCGG
CTTCATCTTCCAGTCCTTCAACCTCGTGCCGACCCTGACGGCCGAGGAGAACATCACGCTGCCCCTCGACATCGCCCGGA
CACCGGTCGACCGGGCGTACCTCGCCGAGGTGGTCGAGGCCGTGGGCCTCGGAGACCGCCTGAAGCACCGTCCGTCCGAG
CTCTCGGGCGGTCAGCAGCAGCGCGTGGCGTGCGCCCGTGCACTCGTGTCCAAGCCGTCCGTGGTGTTCGCCGACGAGCC
GACCGGGAACCTCGACTCCACGTCCTCGCGCGAGGTGCTGTCGTTCCTGAGGTCCTCGGTCGACGACCTCGGTCAGTCGG
TCGTCATGGTCACCCACGACCCCGTCGCCGCGAGCAACGCCCACCGGGTGCTGTTCCTCGCCGACGGCCAGATCGTCGCC
GAGCTCACCGAGCCCACCCCGGACACCGTCCTCGAGGTCCTCGGCTCGCTCTCGCGCGGGACGGCGGGCGACTGA

Protein sequence : 
MSPTASTASVPPAGAADASDAIASARGLTKTYGKGSTVVRALDGVDVDFARGQFTAIMGPSGSGKSTLMHCMAGLDTPTS
GTVVVDGLTVSSMNQRQLTRLRRTQLGFIFQSFNLVPTLTAEENITLPLDIARTPVDRAYLAEVVEAVGLGDRLKHRPSE
LSGGQQQRVACARALVSKPSVVFADEPTGNLDSTSSREVLSFLRSSVDDLGQSVVMVTHDPVAASNAHRVLFLADGQIVA
ELTEPTPDTVLEVLGSLSRGTAGD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-35 46
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-38 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-38 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-38 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sked_32340 YP_003315964.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene598.p Protein 6e-49 48
Sked_32340 YP_003315964.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene798.p Protein 1e-41 46
Sked_32340 YP_003315964.1 antimicrobial peptide ABC transporter ATPase NC_008702.1.4606598. Protein 4e-35 43
Sked_32340 YP_003315964.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7686878. Protein 1e-35 42