Gene Information

Name : Sked_31060 (Sked_31060)
Accession : YP_003315837.1
Strain : Sanguibacter keddieii DSM 10542
Genome accession: NC_013521
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 3457228 - 3458079 bp
Length : 852 bp
Strand : -
Note : PFAM: FliP family; TIGRFAM: flagellar biosynthetic protein FliP

DNA sequence : 
GTGAGGGCCGCGGCCCCCCTGAGGCCCTCCCGGCTGCGCCCGCTCGTCCTGACGCTCCTCGTCCTCGTCCTCGCCCTGGT
CGGCGCCACCGCGACCACGGTCCTCGCGCCGGTCACGGCGCACGCCGTCGAGCTCGTCGCGGCACCGGGCGACCCGATCG
CCCCCGTCGACCCGGTCGCCCCGGCCCCCGGGGTCGTCACCGTCGACCTCGACGGGACCACGACGGCACCCAGCAGCTCG
ATCGTCGTGCTCCTCGGCATCACGCTGCTGTCCGTGGCGCCGTCGCTGCTGCTCATGATGACGAGCTTCACCAAGATCTT
CGTGGTGCTCGCCCTCACCCGGAACGCCCTCGGCCTGCAGGGCGTCCCGCCGAACCAGGTCCTGGCCGGCCTCGCGCTGT
TCCTCTCGCTCTTCATCATGGCGCCGATCATCGGCCAGGTGAACGAGCTCGGCGTGCAGCCCTACGTCAACGGCGGGCTC
GACTTCGGGGCGGCCGTCGAGGCGGGCTCCGCGCCGCTGCGCGAGTTCATGCTCGGGCAGACGCGCGAGGAGGACATCGC
GCTCATGACGCGGGCCGCCGACCAGCCCAACCCGACCGACCCGTCGACCGTCCCGATGCTCACGCTCATCCCGTCCTTCA
TGCTCTCCGAGCTGCGGGCCGCGTTCATCATCGGCTTCGTCATCTTCATCCCCTTCCTCGTCATCGACCTCGTGGTGTCC
GCCTCGCTCATGTCCATGGGCATGATGATGCTCCCGCCGGTGATGATCTCGCTGCCGTTCAAGATCCTCCTGTTCGTCCT
CGTGGACGGCTGGGGCATGATCGTCACGGCCCTCGTCGGAAGCTACGGGTAG

Protein sequence : 
MRAAAPLRPSRLRPLVLTLLVLVLALVGATATTVLAPVTAHAVELVAAPGDPIAPVDPVAPAPGVVTVDLDGTTTAPSSS
IVVLLGITLLSVAPSLLLMMTSFTKIFVVLALTRNALGLQGVPPNQVLAGLALFLSLFIMAPIIGQVNELGVQPYVNGGL
DFGAAVEAGSAPLREFMLGQTREEDIALMTRAADQPNPTDPSTVPMLTLIPSFMLSELRAAFIIGFVIFIPFLVIDLVVS
ASLMSMGMMMLPPVMISLPFKILLFVLVDGWGMIVTALVGSYG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 3e-22 44
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 3e-28 44
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 3e-28 44
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-28 44
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 2e-28 44
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 2e-28 44
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-27 44
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-23 43
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-22 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-22 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-22 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 7e-22 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 7e-22 42
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 9e-16 42
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 1e-16 41
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 1e-16 41
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 9e-24 41
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-15 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sked_31060 YP_003315837.1 flagellar biosynthetic protein FliP VFG1259 Protein 1e-44 52
Sked_31060 YP_003315837.1 flagellar biosynthetic protein FliP VFG2016 Protein 9e-43 50
Sked_31060 YP_003315837.1 flagellar biosynthetic protein FliP VFG2494 Protein 1e-42 50
Sked_31060 YP_003315837.1 flagellar biosynthetic protein FliP VFG0044 Protein 2e-25 45
Sked_31060 YP_003315837.1 flagellar biosynthetic protein FliP VFG0519 Protein 9e-23 42