Gene Information

Name : Sked_30470 (Sked_30470)
Accession : YP_003315781.1
Strain : Sanguibacter keddieii DSM 10542
Genome accession: NC_013521
Putative virulence/resistance : Virulence
Product : cobalamin/Fe3+-siderophore ABC transporter ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 3391246 - 3392094 bp
Length : 849 bp
Strand : +
Note : PFAM: ABC transporter

DNA sequence : 
GTGAAGCCTTCCTCCACCGGCTCCGGAGCACCCGCCGAGCACCCCTCGCTCGCCGGCTCCGACCTGTTCCTCGCCTACGA
CCGGTCGACCGTCGTGCACGGCGCGTCGCTCGACCTCGTCGCCGGGCGGGTCACCGCGCTCATCGGGCCCAACGGGTCCG
GCAAGTCGACCCTGCTGCGCTCGCTCGCCCGCCTCCACCGCCCCACCTCGGGCACCGTGAGCCTGCCCGACGCACCGGAC
GCCCTCGCGCTCAAGCCCAAGGACTTCGCCCGCCAGGTGACCCTCCTGTCGCAGAGCCGCCCGACCCCCAACGGGGTCAC
CGTCCGCGACATCGTCGGCTACGGTCGCCACCCCTACCAGGCCCGCTACCGCCGCACCGACGCCGACGGCCCCCGTGCCG
TCGCCCACGCGATGGAGGTCACCGGGGTCACCGGCATGGCCGACCGCGGCGTCGACGAGCTCTCCGGCGGCGAGCTGCAG
CGCGTCTGGCTCGCGACCTGCCTCGCCCAGGACACCGGCGTGCTCCTGCTCGACGAGCCCACCACCTACCTCGACCTGCG
CTACCAGGTCGAGATCCTCGACCTGGTGCGCGACCTCGCCGACGACCACGGCGTCGCCGTCGGCGTCGTCCTGCACGACC
TCAACCAGGCCGCAGCCGTGGCCGACCACGTCGTCCTGCTCCGCAGCGGCGTCGTCCAGGCCTCCGGGTCCCCCGTCGAC
GTCCTCACCGCCGACCTGCTCAGCGAGACCTACGGCCTGCGCATCGACGTCAGCGTCGACCCGGCCACCGACCTCGTCCG
CACCGAGCCCGTCGGGCGCCACACCACCCGTCGCACCCAGCCCGCCTGA

Protein sequence : 
MKPSSTGSGAPAEHPSLAGSDLFLAYDRSTVVHGASLDLVAGRVTALIGPNGSGKSTLLRSLARLHRPTSGTVSLPDAPD
ALALKPKDFARQVTLLSQSRPTPNGVTVRDIVGYGRHPYQARYRRTDADGPRAVAHAMEVTGVTGMADRGVDELSGGELQ
RVWLATCLAQDTGVLLLDEPTTYLDLRYQVEILDLVRDLADDHGVAVGVVLHDLNQAAAVADHVVLLRSGVVQASGSPVD
VLTADLLSETYGLRIDVSVDPATDLVRTEPVGRHTTRRTQPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-43 45
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 5e-43 43
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-45 41
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-43 41
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-43 41
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-43 41
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-43 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sked_30470 YP_003315781.1 cobalamin/Fe3+-siderophore ABC transporter ATPase BAC0164 Protein 3e-43 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sked_30470 YP_003315781.1 cobalamin/Fe3+-siderophore ABC transporter ATPase VFG1042 Protein 3e-43 43
Sked_30470 YP_003315781.1 cobalamin/Fe3+-siderophore ABC transporter ATPase VFG0925 Protein 3e-48 43