Gene Information

Name : Sked_27880 (Sked_27880)
Accession : YP_003315524.1
Strain : Sanguibacter keddieii DSM 10542
Genome accession: NC_013521
Putative virulence/resistance : Resistance
Product : antimicrobial peptide ABC transporter ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3109314 - 3110021 bp
Length : 708 bp
Strand : +
Note : PFAM: ABC transporter

DNA sequence : 
GTGACGGTGCTCGACGAGGTGTCTGCTCCGCTCGAGGTCCGCCGTCCGGTGGTCGAGCTGGTGGACCTGGGGCGCCAGTT
CCCGGGGCCGGTGGACGCGCTGGTCGACGTGAACCTCACGGTGCGGTCGGGTGACTACCTGTCGATCATCGGTCCGTCGG
GGTCGGGCAAGTCGACGCTGCTGCACATCCTGGGTCTGCTGGACCGTCCGACGAGCGGTGAGTACCGGCTCGACGGCCTG
CCGACCGGCAGCGCGTCGGAGTCGGACCGGGCCGCGCTGCGCGGCGGTCGCATCGGGTTCGTCTTCCAGTCCTTCCACCT
GCTGCCGCACCGCACGGTGCTCGACAACGTGCTGCTCGCGACGCTCTACTCCGGTGTCCCCCGGGGCGAGCGCGAGGACC
GCGCCCGGGCGGCCCTCGAGCGGGTGGGGCTGGGGCACCGTGTGGACTTCACGCCGTCGACCATGTCAGGCGGTGAGCGC
CAGCGCGTGGCGATCGCCCGCTCGGTGGTCGCCGACCCGAAGCTGCTGCTGGCCGACGAGCCCACCGGCAACCTCGACAC
CAAGAACTCGGCGGGGATCATGGACCTCTTCGACGAGCTGCACGCCGACGGCCTCACCCTCGTGGTCATCACGCACGACC
TCGCGGTCTCCGGCCGCGCCGAGCGCCGCGTGCGGATCTCGGACGGCCGGCTGGAGGAGCTCTCGTGA

Protein sequence : 
MTVLDEVSAPLEVRRPVVELVDLGRQFPGPVDALVDVNLTVRSGDYLSIIGPSGSGKSTLLHILGLLDRPTSGEYRLDGL
PTGSASESDRAALRGGRIGFVFQSFHLLPHRTVLDNVLLATLYSGVPRGEREDRARAALERVGLGHRVDFTPSTMSGGER
QRVAIARSVVADPKLLLADEPTGNLDTKNSAGIMDLFDELHADGLTLVVITHDLAVSGRAERRVRISDGRLEELS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-24 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-25 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-25 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-25 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sked_27880 YP_003315524.1 antimicrobial peptide ABC transporter ATPase NC_008702.1.4606598. Protein 1e-39 48
Sked_27880 YP_003315524.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7686878. Protein 6e-39 43