Gene Information

Name : Sked_26100 (Sked_26100)
Accession : YP_003315348.1
Strain : Sanguibacter keddieii DSM 10542
Genome accession: NC_013521
Putative virulence/resistance : Resistance
Product : antimicrobial peptide ABC transporter ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2897895 - 2898593 bp
Length : 699 bp
Strand : -
Note : PFAM: ABC transporter

DNA sequence : 
ATGAGTGCCGAGCCTTCAGCCGTCCTGCCGACACCTGCGCTGCGCGCGGTCGCGGTGAGCCGGACGTTCTCGACCCCCGC
GGGCGACGTGCACGCGGTCGTCGACGTGTCGCTCGAGGTGCAGCCCGGCGAGCTCGTCGTGCTCCGGGGGACGTCGGGGT
CGGGCAAGTCCACGCTGCTCAACGTCCTCGGCGGCATCGACGAGCCGACCGCCGGCCACGTCGAGGTCGCGGGGGAGCGG
CTCGACGCCCTCGACAGCGCCGCTCGGCTGCGCCTGCGCACCACCGGGATCGGCTACGTCCTGCAGTCCTTCGGGCTCGT
CCCGGTGCTCTCCGCCGCGGAGAACGTCGAGGTGCCGCTGCGCCTGCTGCGCACCGAGGCGGGCGAGCGTGACGCCCGGG
TACGGGCGGCGCTCGCCATGGTCGGCCTCGAGCGGCACGGGCACCAGCGTCCCTACGAGCTCTCGGGAGGGCAGCAGCAG
CGCGTGGGCATCGCCCGGGCGCTCGTCGCACGGCCGTCGATCCTGCTCGCCGACGAGCCGACCGGACAGCTCGACTCGGC
CACGGCGGCCACGGTGATGGACCTGCTGCACGACCTCGTCCACCGTGAGGGGGTCGCGGCGGTCGTCTCGACCCACGACC
CCGTGCTCGTCGCGCGGGCGGACCGGGTCCTCACCCTCCACGACGGACGTGTCTCCTGA

Protein sequence : 
MSAEPSAVLPTPALRAVAVSRTFSTPAGDVHAVVDVSLEVQPGELVVLRGTSGSGKSTLLNVLGGIDEPTAGHVEVAGER
LDALDSAARLRLRTTGIGYVLQSFGLVPVLSAAENVEVPLRLLRTEAGERDARVRAALAMVGLERHGHQRPYELSGGQQQ
RVGIARALVARPSILLADEPTGQLDSATAATVMDLLHDLVHREGVAAVVSTHDPVLVARADRVLTLHDGRVS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 2e-25 41
opuBA YP_005124363.1 choline transport system ATP-binding protein Not tested Not named Protein 3e-18 41
opuBA NP_938494.1 choline transport system ATP-binding protein Not tested Not named Protein 3e-18 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sked_26100 YP_003315348.1 antimicrobial peptide ABC transporter ATPase NC_008702.1.4606598. Protein 1e-34 50
Sked_26100 YP_003315348.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7686878. Protein 1e-32 41