Gene Information

Name : Sked_02180 (Sked_02180)
Accession : YP_003313022.1
Strain : Sanguibacter keddieii DSM 10542
Genome accession: NC_013521
Putative virulence/resistance : Virulence
Product : antimicrobial peptide ABC transporter ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 229038 - 229817 bp
Length : 780 bp
Strand : -
Note : PFAM: ABC transporter

DNA sequence : 
ATGCAGCCCACACCCTCTCCCCTGGCACCGCAGCACCCTGCCGCGTCCCTCCTGACCGCCCGCGCCCTGCAGATGGTCTA
CGGGACCGACCACACCGCCACCCGCGCCCTCGCGGGCGTCGACCTGACGATCGCACCGGCTGAGTCGGTCGCGATCATGG
GTCCGTCCGGCTCCGGCAAGACGACGCTCCTGCACTGCCTCGCGGGCATCGTGCGGCCGACCTCCGGGTCGGTGCTGTGG
AGGGGGCAGGACCTCGCGACGCTCAAGGACGTCCAGCGCACCGCGCTGCGCCGCTCGGACTTCGGCTTCGTGTTCCAGTC
GGGCCAGCTGCTCCCCGAGCTCCCCGCGGTCGAGAACGCCGCCCTCCCGCTCATGCTGGGCGGCATGCCCCGCGCTGCCG
CGGTCGCGACCGCCGCAGCACGGCTGCGCGACCTCGGGCTGGCGGGGATGGAAGACCGTCGCCCCGGCGAGCTGTCCGGC
GGGCAGTCCCAGCGTGTGGCCATCGCTCGGGCGCTCGTCGGGTCTCCCGGCGTGATCTTCGCCGACGAGCCCACCGGTGC
CCTCGACCAGACCACCGGCGCCGAGGTGATGGCCGTGCTCACGCAGGCCGCCGCCCGCAGCGGTGCGGCGCTCGTCGTCG
TCACCCACGACCCCACGGTCGCCCGCTGGTGCTCGCGCACCGTCGCGATGCGGGACGGGCTCGTCTCCCGCGAGTTCTTC
GCACCGGGGCGCCAGGACGACGCCCCTTCCCCCGCCGAGCAGGGAGGGCAGGCACGATGA

Protein sequence : 
MQPTPSPLAPQHPAASLLTARALQMVYGTDHTATRALAGVDLTIAPAESVAIMGPSGSGKTTLLHCLAGIVRPTSGSVLW
RGQDLATLKDVQRTALRRSDFGFVFQSGQLLPELPAVENAALPLMLGGMPRAAAVATAAARLRDLGLAGMEDRRPGELSG
GQSQRVAIARALVGSPGVIFADEPTGALDQTTGAEVMAVLTQAAARSGAALVVVTHDPTVARWCSRTVAMRDGLVSREFF
APGRQDDAPSPAEQGGQAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-29 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-31 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-31 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sked_02180 YP_003313022.1 antimicrobial peptide ABC transporter ATPase NC_008702.1.4606598. Protein 2e-34 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sked_02180 YP_003313022.1 antimicrobial peptide ABC transporter ATPase VFG2059 Protein 7e-14 41