Gene Information

Name : Sked_19090 (Sked_19090)
Accession : YP_003314668.1
Strain : Sanguibacter keddieii DSM 10542
Genome accession: NC_013521
Putative virulence/resistance : Virulence
Product : Fe3+-siderophore ABC transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 2120930 - 2121997 bp
Length : 1068 bp
Strand : +
Note : PFAM: FecCD transport family

DNA sequence : 
GTGACACCAGCACCCTCGGGCCCGGCAACCACCGTCGCCGGGCCGACCACCTCGGGCGCCGCAGCCGTGCGGCGCCCGAG
GCGCGTCCGCGCCCTGTGGCTCCTCGTCGTCCTGGCGGTCCTGCTCGTCCTCGTCGTCACCTCGGTGATGGTCGGCTCGC
GCGGCGTGGGGTGGACCGACGCCCTCGCGGCCCTCGGCGGCTCGACCGACGGCTTCGACCAGGCGGCGGTCGCCAAGCGC
ATCCCCCGGACCCTCCTCGCCGTCGTCGCCGGCGCCGCTCTCGGCGTCTCCGGTGCGCTCATGCAGGGCGTGACCCGCAA
CCCCCTCGCCGACCCCGGGATCCTCGGGGTGAACATGGGCGCCTCGCTCGCCGTCGTCACCGGCATCGCGTACTTCGGGC
TCACGGCCGCGTCGAGCTACATCTGGCTCGCCATCGCCGGTGCCGCCGTCACCGCGCTGTTCGTCTACACGATCGGCTCC
CTCGGCCGCGGAGGTGCGACGCCGCTCAAGCTCGCCCTGGCCGGCGCCGCCACCTCGGCCGCCCTCGCGTCCTTCGTCAG
CGCCGTGGTGCTCGGCCGCAACGACATCGCGGGCGGTGTGCGGTCCTGGCAGATCGGCGGCGTCGGCGGTGGCTCCTACG
AGAGCATCCGGCAGGTAGCCCCCTTCCTCGTGGTCGGGCTGGTGCTGGCGCTCGTCTCGGCGCGGAGCCTCAACTCCCTC
GCCCTCGGCGACGAGCTGGCCGCCGGGCTCGGCGAGCGCGTCGCGATCGCCCGCGGCACCGCCGCCCTGAGCGCCGTGAT
CCTCTGTGGCGCCGCGACCGCCGTCACCGGGCCCATCGGCTTCGTGGGGCTCGTCGTCCCGCACGCCTGCCGTCTCCTCG
TCGGCGTCGACCACCGCTGGCTGCTGCCCTTCTCCGCGCTCACCGGCGCGGCGCTGCTCACCGGAGCCGACGTCCTGGGG
CGCATCGCCACCCGGCCCAGCGAGGTCGACGTCGGCATCGTCACCGCGCTGGTCGGCGCGCCCTTCTTCATCTACATCGT
CCGCCGCCAGAAGGTGCGTGCCCTGTGA

Protein sequence : 
MTPAPSGPATTVAGPTTSGAAAVRRPRRVRALWLLVVLAVLLVLVVTSVMVGSRGVGWTDALAALGGSTDGFDQAAVAKR
IPRTLLAVVAGAALGVSGALMQGVTRNPLADPGILGVNMGASLAVVTGIAYFGLTAASSYIWLAIAGAAVTALFVYTIGS
LGRGGATPLKLALAGAATSAALASFVSAVVLGRNDIAGGVRSWQIGGVGGGSYESIRQVAPFLVVGLVLALVSARSLNSL
ALGDELAAGLGERVAIARGTAALSAVILCGAATAVTGPIGFVGLVVPHACRLLVGVDHRWLLPFSALTGAALLTGADVLG
RIATRPSEVDVGIVTALVGAPFFIYIVRRQKVRAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09540 YP_002510937.1 ferric siderophore ABC transporter permease Virulence PPI-1 Protein 2e-33 46
SP_1033 NP_345508.1 iron ABC transporter permease Virulence PPI-1 Protein 2e-33 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sked_19090 YP_003314668.1 Fe3+-siderophore ABC transporter permease VFG0926 Protein 4e-25 44