Gene Information

Name : Sked_13620 (Sked_13620)
Accession : YP_003314136.1
Strain : Sanguibacter keddieii DSM 10542
Genome accession: NC_013521
Putative virulence/resistance : Resistance
Product : antimicrobial peptide ABC transporter ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1536658 - 1537374 bp
Length : 717 bp
Strand : +
Note : PFAM: ABC transporter

DNA sequence :
GTGAGCATCCTCGAGCTCGAGGACGTGACCAAGACCTTCGGCCCCGACGTGGTGGCGCTCGACTCGGTGTCGCTCCGGGT
AGAGCGCGGCGAGCTCTTCACGATCGTCGGGCGGTCCGGCTCGGGCAAGTCCACCCTGATGAACGTCATGGGCACGCTCG
ACACACCGACCTCCGGCACCGTCCGCGTCGACGGCCAGGACACCAGCGGGCTGACAGACCGGGAGACCACCGAGCTGCGG
GCGCGGTCGATCGGCTTCGTGTTCCAGAGCTTCCACCTCGACGACGGCCAGACCGCCACCGGCAACGTCATGACGGGACT
GCTCTACGCGGGCGTGCCACGACGTCAGCGCCGAGCGCTCGCGACCGAGGCGCTCGAGCGTGTCGGGCTCGCTCACCGGG
TCGGGCACCGTCCGCCCCAGCTCTCGGGCGGTGAGCGGCAACGGGTCGCGATCGCGCGGGCCATCGTCAAGGAGCCCGCG
ATCGTCCTCGCCGACGAGCCCACCGGTGCCCTCGACAGCCGTAACGGCGACCTCGTCATGGCCGTGCTCGAGCGACTCAG
CGCGGAGGGCACCACGATCGCCGTGATCACCCACGACCTCACGGTCGCCGCACGGTCGGCGCGGCGGGTCGAGCTGCACG
ACGGCGTGGTCGTCGACGACGGTGCGCCTGCCGACGCCGGTGCACGCGTCCAGCACGCCACCGGAGGTGGACGATGA

Protein sequence :
MSILELEDVTKTFGPDVVALDSVSLRVERGELFTIVGRSGSGKSTLMNVMGTLDTPTSGTVRVDGQDTSGLTDRETTELR
ARSIGFVFQSFHLDDGQTATGNVMTGLLYAGVPRRQRRALATEALERVGLAHRVGHRPPQLSGGERQRVAIARAIVKEPA
IVLADEPTGALDSRNGDLVMAVLERLSAEGTTIAVITHDLTVAARSARRVELHDGVVVDDGAPADAGARVQHATGGGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 6e-31 41
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-29 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-30 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 7e-30 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sked_13620 YP_003314136.1 antimicrobial peptide ABC transporter ATPase NC_008702.1.4606598. Protein 8e-37 47
Sked_13620 YP_003314136.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7686878. Protein 1e-44 46
Sked_13620 YP_003314136.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7686946. Protein 9e-36 43
Sked_13620 YP_003314136.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene798.p Protein 2e-32 42