Gene Information

Name : Sked_13410 (Sked_13410)
Accession : YP_003314115.1
Strain : Sanguibacter keddieii DSM 10542
Genome accession: NC_013521
Putative virulence/resistance : Virulence
Product : NAD-dependent aldehyde dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : 1.2.1.3
Position : 1510402 - 1511925 bp
Length : 1524 bp
Strand : -
Note : PFAM: Aldehyde dehydrogenase family

DNA sequence :
ATGACCGTCTACGCAGCCCCCGGCACCCCCGAGGCCCTCGTCACCTTCAAGTCCCGCTACGAGCACTGGATCGGCGGCCG
CTGGGTCGCCCCCGTCAAGGGCCAGTACTTCGAGGACATCTCCCCCGTCAACGGCAAGCCCTTCGCGGAGGTCGCGCGCG
GCACCGCCGAGGACATCGAGGCCGCCCTCGACGCCGCCCACAAGGCCGCCCCGTCGTGGGGCAAGACCACCGGCACCGAG
CGCGCCGACGTCCTCAACAAGATCGCCGACGTCATCGACGCGAACCTCGAGCTCCTCGCGGTCGCCGAGACCTGGGACAA
CGGCAAGCCCGTCCGTGAACCCCTCAACGCCGACCTACCCCTCGCCGCCGACCACTTCCGGTACTTCGCGTCGGTGATCC
GCGCGCAGGAGGGCGAGTTCACCGAGCTCGACAACGACACCGTCGCCTACCACTACGCCGAGCCGCTCGGTGTGGTCGGG
CAGATCATCCCCTGGAACTTCCCGATCCTCATGGCCACCTGGAAGCTCGCGCCCGCGCTGGCCGGCGGCAACACGATCGT
GCTCAAGCCGGCCGAGCAGACACCGGTGTCGATCCTCGTGCTGATCGAGCTCATCGGCGACATCCTCCCGCCCGGGGTGC
TCAACGTAGTCAACGGGTTCGGCCTCGAGGCCGGCAAGCCGCTCGCCTCGAGCCCGCGGATCCGCAAGATCGCCTTCACC
GGCGAGACGACCACGGGCCGCCTCATCCTCCAGTACGCGAGCGCGAACCTCATCCCCTCGACCGTCGAGCTCGGCGGGAA
GAGCCCGAACATCTTCTTCGAGGACGTGGCCGACAAGAACGACGCGTACTACGACAAGGCGCAGGAGGGCTTCGTGCTCT
TCGCCTTCAACCAGGGCGAGGTCTGCACCTGCCCGTCGCGGTCGCTCATCCAGAAGCCCATCTACGACTCGTTCCTGTCC
GACGCGCTCGACCGCACCAAGAAGGCCGTGCAGGGGAACCCGCTCGACACCGACACCCAGGTCGGGGCGCAGGCCTCGAA
CGACCAGCTCGAGAAGATCCTCAGCTACATCGACATCGGCAAGCAGGAGGGAGCCCGGCTGCTGCTCGGCGGCGAGCGCG
TGGACCTCGGCGGTGACCTCACCGACGGGTACTACGTGGCACCGACGATCTTCGAGGGGCAGAACTCGATGCGGATCTTC
CAGGAGGAGATCTTCGGTCCGGTCGTCGCGGTGACGAGCTTCGACGACTACGCCGACGCGATCGCGCAGGCCAACGACAC
GCTGTACGGCCTCGGGGCAGGCGTGTGGTCGCGCAACGGGAACCTCGCCTACCGGGCCGGGCGCGACATCAAGGCGGGTC
GCGTGTGGGTGAACAACTACCACGCGTACCCGGCCGGGGCGGCGTTCGGCGGGTACAAGAGCTCGGGGATCGGGCGGGAG
AACAGCAAGCTCGCACTCGACCACTACCAGCAGACGAAGAACCTGCTGGTGAGCTACTCGGAGTCGGCCCTCGGGTTCTT
CTAG

Protein sequence :
MTVYAAPGTPEALVTFKSRYEHWIGGRWVAPVKGQYFEDISPVNGKPFAEVARGTAEDIEAALDAAHKAAPSWGKTTGTE
RADVLNKIADVIDANLELLAVAETWDNGKPVREPLNADLPLAADHFRYFASVIRAQEGEFTELDNDTVAYHYAEPLGVVG
QIIPWNFPILMATWKLAPALAGGNTIVLKPAEQTPVSILVLIELIGDILPPGVLNVVNGFGLEAGKPLASSPRIRKIAFT
GETTTGRLILQYASANLIPSTVELGGKSPNIFFEDVADKNDAYYDKAQEGFVLFAFNQGEVCTCPSRSLIQKPIYDSFLS
DALDRTKKAVQGNPLDTDTQVGAQASNDQLEKILSYIDIGKQEGARLLLGGERVDLGGDLTDGYYVAPTIFEGQNSMRIF
QEEIFGPVVAVTSFDDYADAIAQANDTLYGLGAGVWSRNGNLAYRAGRDIKAGRVWVNNYHAYPAGAAFGGYKSSGIGRE
NSKLALDHYQQTKNLLVSYSESALGFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 7e-149 62
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 9e-156 61
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 9e-156 61
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 9e-156 61
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 3e-155 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sked_13410 YP_003314115.1 NAD-dependent aldehyde dehydrogenase VFG0082 Protein 3e-149 62