Gene Information

Name : Sked_13210 (Sked_13210)
Accession : YP_003314095.1
Strain : Sanguibacter keddieii DSM 10542
Genome accession: NC_013521
Putative virulence/resistance : Virulence
Product : Mn2+/Zn2+ ABC transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 1484648 - 1485478 bp
Length : 831 bp
Strand : +
Note : PFAM: ABC 3 transport family

DNA sequence : 
ATGACCGTCCTCACCTTTTTGACCGACCCCTTCGCCTACGAGTTCATGCAGCGCTCGCTGCTCGTCACGGTCGTCGCGAG
CATCGTCTGCGCGCTGCTCAGCTGCTGGCTCGTCCTCATCGGCTGGTCGCTCCTCGGCGACGCCGTCTCCCACGCGGTCC
TGCCGGGCGTCGTGCTCTCGTACGTGGTGGGGATCCCGTTCGCCGCCGGGGCCCTCGTCTTCGGGTTCGGCGCGGTGGCC
CTCATCGGCGCGGTCCGGGACACCACGCGCCTCAAGGAGGACGCGGTCATCGGCGTGGTCTTCACCTCGCTGTTCGCGCT
CGGGATCGTCCTGGTCTCGGTGACCCCCAGCCACATCGACCTCACGCACATCTTGTTCGGCAACCTGCTCGGGGTGACCG
ACCTCGACATCGGGCAGGTCCTGGTCCTGGGCACCCTCACCGCCGTGGTGCTCGTGGTGAAGCGCCGCGACCTCACGCTG
CTCGCCTTCGACCCCGTGCACGCCCACGCCATCGGGCTCTCGCCGCGGCGCCTGCGCGCCCTGCTGCTCGCGGCCCTCGC
CGTCACGGTGGTCGTCGCGCTGCAGGCCGTCGGCGTGATCCTCGTGGTCGCGATGGTCATCACGCCCGGCGCGACGGCCT
TCCTGCTCACGGACCGCATCTCGCGGATGCTCGTCGTCGCCCCCGTGGTCGCGGCGCTCTGCGCGGTCGCCGGGATGTAC
GCGAGCTATTACCTCGACGCGTCGAGCGCCGGGATGATCGTCCTCGCCCAGGGGCTCGCCTTCGGGCTGGCCTACGCGGC
GACCTGGCGCAGCCGCAGCCGGCGGGCGTGA

Protein sequence : 
MTVLTFLTDPFAYEFMQRSLLVTVVASIVCALLSCWLVLIGWSLLGDAVSHAVLPGVVLSYVVGIPFAAGALVFGFGAVA
LIGAVRDTTRLKEDAVIGVVFTSLFALGIVLVSVTPSHIDLTHILFGNLLGVTDLDIGQVLVLGTLTAVVLVVKRRDLTL
LAFDPVHAHAIGLSPRRLRALLLAALAVTVVVALQAVGVILVVAMVITPGATAFLLTDRISRMLVVAPVVAALCAVAGMY
ASYYLDASSAGMIVLAQGLAFGLAYAATWRSRSRRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 7e-38 46
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-37 46
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-37 46
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-37 45
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-37 45
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-32 42
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-32 42
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-32 42
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 9e-33 42
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-32 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sked_13210 YP_003314095.1 Mn2+/Zn2+ ABC transporter permease BAC0352 Protein 4e-38 46
Sked_13210 YP_003314095.1 Mn2+/Zn2+ ABC transporter permease BAC0441 Protein 8e-36 46
Sked_13210 YP_003314095.1 Mn2+/Zn2+ ABC transporter permease BAC0442 Protein 3e-37 45
Sked_13210 YP_003314095.1 Mn2+/Zn2+ ABC transporter permease BAC0351 Protein 5e-33 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sked_13210 YP_003314095.1 Mn2+/Zn2+ ABC transporter permease VFG0528 Protein 4e-38 46
Sked_13210 YP_003314095.1 Mn2+/Zn2+ ABC transporter permease VFG0527 Protein 5e-33 42