Gene Information

Name : Sked_13200 (Sked_13200)
Accession : YP_003314094.1
Strain : Sanguibacter keddieii DSM 10542
Genome accession: NC_013521
Putative virulence/resistance : Virulence
Product : ATPase of Mn/Zn ABC-type transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 1483863 - 1484651 bp
Length : 789 bp
Strand : +
Note : PFAM: ABC transporter

DNA sequence : 
GTGAGCGCCCGCCGCCAGCGCACGCAGGAGTGGTCGTCCAGCGCCGACGCCGTGGTCGTCGACTCCCTGAGCTACACCTA
CCCCTCGCCGTCCGGTCGCGGACGTGCCGCCCGCCCGGCCCTCGACCAGGCCTCGCTCACGGTGCGCGCGGGGTCGATCA
CCGGGCTCGTCGGCGTCAACGGCGCCGGCAAGTCGACCGTCTTCAAGGCGCTCATGGGCATCGTCGAGCCTGAGGGCGGC
CGGCTGAGCATCCTCGGCCAGCCGCCCCAGGTCGCCCGTCGTGCCGGCCTCGTCGGGTACGTCCCGCAGGCCGAGGAGAT
CGACGACACCTTCCCGCTCACCGTCCGTGACGTCGTGTCCATGGGGCGCTACGGCCGTCTCGGGACCACGCGGCGGCTCG
GCCGCACCGACCGGGCCGCGGTCGACGCCGCGCTCGCCCAGGTGCAGCTCACCGAGCTCGCCGACCGGCAGATCGGCCGG
CTCTCCGGCGGTCAGCGCCGCCGCGTCTTCGTCGCCCGCAGCCTGTGCCAGGAGGCCCAGGTGCTCCTGCTCGACGAGCC
CTTCGCCGGGGTCGACCGCCGGTCCGAGGCGCTCGTCGTCGGGGTCCTGCGGGACCTCGTCGCCCGCGGCGGCGCCGTGC
TGGTCTCCACCCACGACCTCGTCGCGCTCCCTGCCCTCGCCGACCACGTGGTGCTCGTGCACCACACCGTGCTCGCCGCC
GGTCCTCCCGGCGACGTGCTCACCGCCGAGAACCTCGCGCGTGCCTTCGGCGGGGAGGAGACCCGATGA

Protein sequence : 
MSARRQRTQEWSSSADAVVVDSLSYTYPSPSGRGRAARPALDQASLTVRAGSITGLVGVNGAGKSTVFKALMGIVEPEGG
RLSILGQPPQVARRAGLVGYVPQAEEIDDTFPLTVRDVVSMGRYGRLGTTRRLGRTDRAAVDAALAQVQLTELADRQIGR
LSGGQRRRVFVARSLCQEAQVLLLDEPFAGVDRRSEALVVGVLRDLVARGGAVLVSTHDLVALPALADHVVLVHHTVLAA
GPPGDVLTAENLARAFGGEETR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 5e-31 52
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 5e-31 52
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 7e-32 52
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-32 52
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 5e-32 52

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sked_13200 YP_003314094.1 ATPase of Mn/Zn ABC-type transporter BAC0350 Protein 3e-32 52
Sked_13200 YP_003314094.1 ATPase of Mn/Zn ABC-type transporter BAC0440 Protein 8e-28 47
Sked_13200 YP_003314094.1 ATPase of Mn/Zn ABC-type transporter BAC0400 Protein 1e-20 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sked_13200 YP_003314094.1 ATPase of Mn/Zn ABC-type transporter VFG0526 Protein 3e-32 52